Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P17_pT_F20
(700 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0971 + 8169197-8169311,8170351-8170458,8170533-8170725,817... 77 2e-14
03_06_0563 - 34738732-34738890,34738965-34739009,34739154-347392... 75 4e-14
05_06_0014 + 24854462-24854570,24854958-24855065,24855240-248554... 69 3e-12
01_06_1654 - 38924090-38924101,38924183-38924215,38924737-389248... 69 5e-12
04_03_0812 - 19922208-19922357,19922448-19922564,19922681-199227... 50 1e-06
08_02_1590 + 28074137-28074247,28074791-28074886,28074976-280750... 35 0.054
08_01_0370 + 3275771-3275789,3275972-3276976,3277062-3277624 30 1.5
>07_01_0971 +
8169197-8169311,8170351-8170458,8170533-8170725,
8170811-8171069,8171151-8171207,8171433-8171480,
8171571-8171657,8171743-8171800,8171891-8171958,
8172066-8172161,8172244-8172291,8172658-8172696,
8172782-8172868,8173136-8173147
Length = 424
Score = 76.6 bits (180), Expect = 2e-14
Identities = 35/74 (47%), Positives = 47/74 (63%), Gaps = 1/74 (1%)
Frame = -2
Query: 696 NPAYKGPWVHPXIDNPEYTPDSNLYKRDEICAVXLDLWQVKSGTIXDDFLITDDPXAAKE 517
NP Y+G W P IDNP++ D +Y D + + ++LWQVKSGT+ D+FLITDDP AK
Sbjct: 293 NPNYQGKWKAPMIDNPDFKDDPYIYAFDSLKYIGIELWQVKSGTLFDNFLITDDPELAKT 352
Query: 516 -RGEVIKKRQEGEK 478
E K ++ EK
Sbjct: 353 FAEETWGKHKDAEK 366
>03_06_0563 -
34738732-34738890,34738965-34739009,34739154-34739201,
34739291-34739386,34739467-34739534,34739633-34739690,
34739783-34739869,34740004-34740051,34740360-34740416,
34740525-34740783,34740877-34741102,34741168-34741275,
34741885-34741987
Length = 453
Score = 75.4 bits (177), Expect = 4e-14
Identities = 35/74 (47%), Positives = 46/74 (62%), Gaps = 1/74 (1%)
Frame = -2
Query: 696 NPAYKGPWVHPXIDNPEYTPDSNLYKRDEICAVXLDLWQVKSGTIXDDFLITDDPXAAKE 517
NP YKG W P I NP+Y D +Y D + + ++LWQVKSGT+ D+ LITDDP AK+
Sbjct: 300 NPNYKGKWKAPLIPNPDYKDDPYIYAFDSLNHIGIELWQVKSGTLFDNILITDDPEYAKK 359
Query: 516 -RGEVIKKRQEGEK 478
E K ++ EK
Sbjct: 360 FAEETWAKHKDAEK 373
>05_06_0014 +
24854462-24854570,24854958-24855065,24855240-24855432,
24855892-24856150,24856236-24856292,24856370-24856417,
24856725-24856811,24856885-24856942,24857084-24857151,
24857279-24857374,24857483-24857539,24857906-24857952,
24858184-24858210,24858312-24858504
Length = 468
Score = 69.3 bits (162), Expect = 3e-12
Identities = 33/75 (44%), Positives = 46/75 (61%), Gaps = 1/75 (1%)
Frame = -2
Query: 696 NPAYKGPWVHPXIDNPEYTPDSNLYKRDEICAVXLDLWQVKSGTIXDDFLITDDPXAAKE 517
NP YKG W P IDNPE+ D +LY + V +++WQVK+G++ D+ LI DDP A+
Sbjct: 291 NPNYKGKWKIPWIDNPEFEDDPDLYVLKPLQYVGIEVWQVKAGSVFDNILICDDPEYARS 350
Query: 516 -RGEVIKKRQEGEKK 475
EV +E EK+
Sbjct: 351 VVDEVRAANKEAEKE 365
>01_06_1654 -
38924090-38924101,38924183-38924215,38924737-38924829,
38924909-38924965,38925048-38925143,38925237-38925304,
38925429-38925486,38925572-38925658,38925935-38925982,
38926060-38926116,38926200-38926458,38926666-38926858,
38926991-38927098,38927849-38927957
Length = 425
Score = 68.5 bits (160), Expect = 5e-12
Identities = 28/63 (44%), Positives = 41/63 (65%)
Frame = -2
Query: 696 NPAYKGPWVHPXIDNPEYTPDSNLYKRDEICAVXLDLWQVKSGTIXDDFLITDDPXAAKE 517
NP YKG W P IDNPE+ D +LY + + +++WQVK+G++ D+ LI DDP A++
Sbjct: 291 NPNYKGKWKIPWIDNPEFEDDPDLYVLKPLKYIGIEVWQVKAGSVFDNILICDDPEYARK 350
Query: 516 RGE 508
E
Sbjct: 351 AAE 353
>04_03_0812 -
19922208-19922357,19922448-19922564,19922681-19922752,
19922864-19923993,19924939-19925008,19925125-19925199
Length = 537
Score = 50.4 bits (115), Expect = 1e-06
Identities = 28/82 (34%), Positives = 44/82 (53%), Gaps = 8/82 (9%)
Frame = -2
Query: 699 DNPAYKGPWVHPXIDNPEYTPDSNLYKRDEICAVXLDLWQVKSGTIXDDFLITDDPXAA- 523
DNP YKG W I NPEY + + D I A+ +++W ++ G + D+ LI DD A
Sbjct: 332 DNPNYKGIWKPQEIPNPEYF-ELDKPDSDPIAAIGIEIWTMQDGILFDNILIADDEKVAT 390
Query: 522 -------KERGEVIKKRQEGEK 478
K + EV K++++ E+
Sbjct: 391 SILEKSWKPKYEVEKEKEKAEE 412
>08_02_1590 +
28074137-28074247,28074791-28074886,28074976-28075023,
28075278-28075430
Length = 135
Score = 35.1 bits (77), Expect = 0.054
Identities = 18/36 (50%), Positives = 24/36 (66%), Gaps = 1/36 (2%)
Frame = -2
Query: 582 QVKSGTIXDDFLITDDPXAAKE-RGEVIKKRQEGEK 478
+VKSGT+ D+ LITDDP AK+ E K ++ EK
Sbjct: 37 RVKSGTLFDNILITDDPEYAKKFAEETWAKHKDAEK 72
>08_01_0370 + 3275771-3275789,3275972-3276976,3277062-3277624
Length = 528
Score = 30.3 bits (65), Expect = 1.5
Identities = 15/39 (38%), Positives = 22/39 (56%)
Frame = -2
Query: 210 F*HCACVWLEFYRFVGTXCV*VNMCPLFCTDVRVDGDYA 94
F +CA L YR G+ + N+C +F T + V+G YA
Sbjct: 388 FMYCAIPALFLYRTYGSMSIMWNICLMFITGMFVNGPYA 426
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,388,231
Number of Sequences: 37544
Number of extensions: 238134
Number of successful extensions: 575
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 561
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 574
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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