Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P17_pT_F20
(700 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X59589-1|CAA42159.1| 395|Caenorhabditis elegans calreticulin pr... 86 3e-17
AF125963-7|AAD14746.1| 395|Caenorhabditis elegans Calreticulin ... 86 3e-17
Z22181-5|CAA80183.1| 619|Caenorhabditis elegans Hypothetical pr... 44 8e-05
U88165-5|AAK21392.1| 393|Caenorhabditis elegans Downstream of m... 30 1.8
U34893-1|AAB01720.1| 393|Caenorhabditis elegans DOM-3 protein. 30 1.8
AL023839-2|CAA19508.1| 1066|Caenorhabditis elegans Hypothetical ... 28 5.6
AB006659-1|BAA21847.1| 655|Caenorhabditis elegans E6-AP ubiquit... 28 5.6
AL132898-8|CAB60959.1| 297|Caenorhabditis elegans Hypothetical ... 28 7.4
>X59589-1|CAA42159.1| 395|Caenorhabditis elegans calreticulin
protein.
Length = 395
Score = 85.8 bits (203), Expect = 3e-17
Identities = 39/75 (52%), Positives = 48/75 (64%), Gaps = 1/75 (1%)
Frame = -2
Query: 696 NPAYKGPWVHPXIDNPEYTPDSNLYKRDEICAVXLDLWQVKSGTIXDDFLITDDPXAAK- 520
NPAYKG W+HP I+NPEYTPD LY + A+ DLWQVKSGTI D+ +ITD A+
Sbjct: 277 NPAYKGKWIHPEIENPEYTPDDELYSYESWGAIGFDLWQVKSGTIFDNIIITDSVEEAEA 336
Query: 519 ERGEVIKKRQEGEKK 475
E K + EK+
Sbjct: 337 HAAETFDKLKTVEKE 351
>AF125963-7|AAD14746.1| 395|Caenorhabditis elegans Calreticulin
protein 1 protein.
Length = 395
Score = 85.8 bits (203), Expect = 3e-17
Identities = 39/75 (52%), Positives = 48/75 (64%), Gaps = 1/75 (1%)
Frame = -2
Query: 696 NPAYKGPWVHPXIDNPEYTPDSNLYKRDEICAVXLDLWQVKSGTIXDDFLITDDPXAAK- 520
NPAYKG W+HP I+NPEYTPD LY + A+ DLWQVKSGTI D+ +ITD A+
Sbjct: 277 NPAYKGKWIHPEIENPEYTPDDELYSYESWGAIGFDLWQVKSGTIFDNIIITDSVEEAEA 336
Query: 519 ERGEVIKKRQEGEKK 475
E K + EK+
Sbjct: 337 HAAETFDKLKTVEKE 351
>Z22181-5|CAA80183.1| 619|Caenorhabditis elegans Hypothetical
protein ZK632.6 protein.
Length = 619
Score = 44.4 bits (100), Expect = 8e-05
Identities = 22/73 (30%), Positives = 36/73 (49%), Gaps = 3/73 (4%)
Frame = -2
Query: 696 NPAYKGPWVHPXIDNPEYTPDSNLYKRDEICAVXLDLWQVKSGTIXDDFLIT---DDPXA 526
NPA+KG W IDNP Y I AV +++W + + D+ LIT +D
Sbjct: 382 NPAFKGKWTARLIDNPNYFEPKPFAGLAPITAVGIEMWTMSENILFDNILITSSEEDSSD 441
Query: 525 AKERGEVIKKRQE 487
++ +K+++E
Sbjct: 442 VAKQTFYVKQKEE 454
>U88165-5|AAK21392.1| 393|Caenorhabditis elegans Downstream of mes
(in same operon)protein 3 protein.
Length = 393
Score = 29.9 bits (64), Expect = 1.8
Identities = 18/62 (29%), Positives = 27/62 (43%), Gaps = 3/62 (4%)
Frame = +3
Query: 24 SIHVPAHGASPITKH*IITYIN---SERNPHLXGHQYKTTDTYLLTHXMSLRIGKIRAKH 194
S H+P P+ I + N RNP Q K Y + + L++G++RAK
Sbjct: 26 SKHIPKITGQPLPNEVQIPFDNMIYETRNPPKFEKQAKFISEYCINYDRKLQLGRMRAKK 85
Query: 195 TH 200
H
Sbjct: 86 FH 87
>U34893-1|AAB01720.1| 393|Caenorhabditis elegans DOM-3 protein.
Length = 393
Score = 29.9 bits (64), Expect = 1.8
Identities = 18/62 (29%), Positives = 27/62 (43%), Gaps = 3/62 (4%)
Frame = +3
Query: 24 SIHVPAHGASPITKH*IITYIN---SERNPHLXGHQYKTTDTYLLTHXMSLRIGKIRAKH 194
S H+P P+ I + N RNP Q K Y + + L++G++RAK
Sbjct: 26 SKHIPKITGQPLPNEVQIPFDNMIYETRNPPKFEKQAKFISEYCINYDRKLQLGRMRAKK 85
Query: 195 TH 200
H
Sbjct: 86 FH 87
>AL023839-2|CAA19508.1| 1066|Caenorhabditis elegans Hypothetical
protein Y39A1C.2 protein.
Length = 1066
Score = 28.3 bits (60), Expect = 5.6
Identities = 21/66 (31%), Positives = 31/66 (46%), Gaps = 4/66 (6%)
Frame = +1
Query: 172 SVKFEPNTRTVLKTNDNSIGIVEDCA-MRGFKRRILHARTLRTPRYSM---SWHSLINHN 339
+V P+ RT+ TN+N I V A R F+R + T S+ +W SL N
Sbjct: 857 TVDLVPSGRTISVTNENKIDYVHRMAHHRVFRRTQEQCKAFVTGMQSILQPTWLSLFAPN 916
Query: 340 SLQLIV 357
LQ ++
Sbjct: 917 DLQCLI 922
>AB006659-1|BAA21847.1| 655|Caenorhabditis elegans E6-AP
ubiquitin-protein ligase protein.
Length = 655
Score = 28.3 bits (60), Expect = 5.6
Identities = 21/66 (31%), Positives = 31/66 (46%), Gaps = 4/66 (6%)
Frame = +1
Query: 172 SVKFEPNTRTVLKTNDNSIGIVEDCA-MRGFKRRILHARTLRTPRYSM---SWHSLINHN 339
+V P+ RT+ TN+N I V A R F+R + T S+ +W SL N
Sbjct: 445 TVDLVPSGRTISVTNENKIDYVHRMAHHRVFRRTQEQCKAFVTGMQSILQPTWLSLFAPN 504
Query: 340 SLQLIV 357
LQ ++
Sbjct: 505 DLQCLI 510
>AL132898-8|CAB60959.1| 297|Caenorhabditis elegans Hypothetical
protein Y59A8B.11 protein.
Length = 297
Score = 27.9 bits (59), Expect = 7.4
Identities = 17/46 (36%), Positives = 20/46 (43%)
Frame = -3
Query: 314 DXEYLGVRSVRAWRILLLKPLIAQSSTIPILLSFVFSTVRVFGSNF 177
D YL V R +LLK + +S I F VRVF NF
Sbjct: 221 DTAYLSVADAVKIRDILLKSTVFESGIITSRNIFSVGVVRVFNPNF 266
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,245,855
Number of Sequences: 27780
Number of extensions: 219086
Number of successful extensions: 525
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 497
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 525
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1613473434
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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