Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_pT_F18
         (757 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1002.11 |gaa1||GPI-anchor transamidase complex subunit Gaa1 ...    29   0.95 
SPAC30D11.10 |rad22||DNA repair protein Rad22|Schizosaccharomyce...    28   1.7  

>SPAC1002.11 |gaa1||GPI-anchor transamidase complex subunit Gaa1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 581

 Score = 28.7 bits (61), Expect = 0.95
 Identities = 15/53 (28%), Positives = 26/53 (49%)
 Frame = -2

Query: 261 FNLYLFDKFCLVVVTYSIENQNLIFFCVRHSFVYLV*CFLVIXFSXYKEKQRA 103
           F+ +LF  FC +   Y + +   I   +   F+YL+  F+ I FS +   + A
Sbjct: 405 FSFWLFSIFCTIAAYYLVSSSTKITVFI---FLYLMLTFIGIIFSTFMTSEDA 454


>SPAC30D11.10 |rad22||DNA repair protein Rad22|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 469

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 21/70 (30%), Positives = 33/70 (47%), Gaps = 9/70 (12%)
 Frame = -1

Query: 640 DFKTENEPLKKYALCMLIKSQLMTKDGKFKKDVALAKVPN------AEDKLKVEKLIDA- 482
           DF  EN+   + +L + +  ++  KDG + +D+    + N      A +K K E   DA 
Sbjct: 84  DFMDENKENGRISLGLSVIVRVTIKDGAYHEDIGYGSIDNCRGKASAFEKCKKEGTTDAL 143

Query: 481 --CLANKGNS 458
              L N GNS
Sbjct: 144 KRALRNFGNS 153


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,877,089
Number of Sequences: 5004
Number of extensions: 58605
Number of successful extensions: 181
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 173
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 181
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 361294920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)