Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_pT_F15
         (708 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC12G12.16c ||SPAC18B11.01c|nuclease, XP-G family|Schizosaccha...    31   0.16 
SPBC1348.08c |||glycoprotein |Schizosaccharomyces pombe|chr 2|||...    27   3.5  
SPAC977.07c |||glycoprotein |Schizosaccharomyces pombe|chr 1|||M...    27   3.5  
SPAC328.01c ||SPAC3A11.01|karyopherin|Schizosaccharomyces pombe|...    26   4.6  
SPBC19C2.13c |||conserved eukaryotic protein|Schizosaccharomyces...    25   8.0  
SPAC26H5.11 |||spore wall assembly protein |Schizosaccharomyces ...    25   8.0  

>SPAC12G12.16c ||SPAC18B11.01c|nuclease, XP-G
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 496

 Score = 31.1 bits (67), Expect = 0.16
 Identities = 22/54 (40%), Positives = 27/54 (50%)
 Frame = +3

Query: 384 KKDVTSKKN*HSFDSVNELTL*YHLLTIPKMFLTLMSFTYISLTKSLSESDNLQ 545
           KK +T+KK      S NEL    H   IPK FL L   TY+ L K +    N+Q
Sbjct: 419 KKFLTAKKLFTDLPSNNELFSFIH--NIPKEFLHLSDSTYLDLEKQVLRIFNVQ 470


>SPBC1348.08c |||glycoprotein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 416

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 12/36 (33%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
 Frame = -2

Query: 203 LSNIYCGCKDICVVIFTDIP--STYPILVSSIIKAF 102
           +++ YC CK I    F  IP   TY ++V+++   F
Sbjct: 271 MASTYCACKVIVYQFFLRIPETDTYTLVVNNVDDVF 306


>SPAC977.07c |||glycoprotein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 416

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 12/36 (33%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
 Frame = -2

Query: 203 LSNIYCGCKDICVVIFTDIP--STYPILVSSIIKAF 102
           +++ YC CK I    F  IP   TY ++V+++   F
Sbjct: 271 MASTYCACKVIVYQFFLRIPETDTYTLVVNNVDDVF 306


>SPAC328.01c ||SPAC3A11.01|karyopherin|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1234

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = -2

Query: 215 YNIILSNIYCGCKDICVVIFTDIPSTYPILVSSIIKAFEL 96
           Y IIL N++  CK +  + F D     P+L++ +I    L
Sbjct: 541 YEIILQNLFLWCKQLVEINFKD-----PMLITRLISVLVL 575


>SPBC19C2.13c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 366

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = -2

Query: 158 FTDIPSTYPILVSSIIKAFELLGVSGNESV 69
           F+ +  T+P LVS+++K    L V   E++
Sbjct: 277 FSSLNDTFPSLVSTVVKMSSKLHVPSTEAI 306


>SPAC26H5.11 |||spore wall assembly protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 965

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = -1

Query: 375 NVACYKLHWQLVSFLSSTI 319
           +VACY  HW++   ++ST+
Sbjct: 770 DVACYLNHWEVAGCVASTL 788


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,556,425
Number of Sequences: 5004
Number of extensions: 49898
Number of successful extensions: 128
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 128
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 329179816
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)