Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_pT_F14
         (565 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC11B10.01 |alg2|SPBC32H8.14|mannosyltransferase complex subun...    26   4.4  
SPBC609.03 |||WD repeat protein, human IQWD1 family|Schizosaccha...    25   7.7  
SPBC18A7.01 ||SPBC4F6.19c|X-Pro dipeptidase |Schizosaccharomyces...    25   7.7  
SPBC530.12c |pdf1||palmitoyl protein thioesterase-dolichol pyrop...    25   7.7  
SPBC32H8.13c |mok12||alpha-1,3-glucan synthase Mok12|Schizosacch...    25   7.7  

>SPBC11B10.01 |alg2|SPBC32H8.14|mannosyltransferase complex subunit
           Alg2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 511

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 10/23 (43%), Positives = 17/23 (73%)
 Frame = -1

Query: 508 VVGSYVLSASFLTFSIAKKLVKL 440
           ++G+ ++S SFLTF++  KL  L
Sbjct: 489 MLGTCIVSVSFLTFTVYAKLTNL 511


>SPBC609.03 |||WD repeat protein, human IQWD1
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 809

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
 Frame = +1

Query: 52  VTLCNLLTVNFNYLIVIQNPCH*PVFHV-ECLKYT*RFSKL 171
           +T C     N N L+V  N  +  +FHV E   YT  F+K+
Sbjct: 268 ITCCQFSAANPNELLVSWNSDYVYLFHVHEDKSYTPTFNKI 308


>SPBC18A7.01 ||SPBC4F6.19c|X-Pro dipeptidase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 451

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = -1

Query: 484 ASFLTFSIAKKLVKLREVKS 425
           A F TF ++ ++  LRE+KS
Sbjct: 204 AGFTTFGVSPRVASLREIKS 223


>SPBC530.12c |pdf1||palmitoyl protein thioesterase-dolichol
           pyrophosphate phosphatase fusion 1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 603

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 16/37 (43%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
 Frame = -1

Query: 232 FWRANVDKFSSILITCRLFRLV*KIFMYISD-IPHEK 125
           FW   V K  S+ +T  L  L    F YI D IPH K
Sbjct: 548 FWVYLVGKLRSLGVTKWLLSLPPLQFFYIKDTIPHSK 584


>SPBC32H8.13c |mok12||alpha-1,3-glucan synthase
            Mok12|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2352

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -1

Query: 526  YFNSRIVVGSYVLSASFLTFSIAKKLVKL 440
            +F SR+V   Y+LS  F  F I+  LV +
Sbjct: 1985 WFLSRVVQARYILSLPFFFFGISFILVAI 2013


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,080,445
Number of Sequences: 5004
Number of extensions: 39413
Number of successful extensions: 95
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 94
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 95
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 238029836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)