Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_pT_F14
         (565 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z73907-1|CAA98124.1| 4753|Caenorhabditis elegans Hypothetical pr...    30   1.0  
M96150-1|AAA28105.1| 4753|Caenorhabditis elegans LDL receptor-re...    30   1.0  
U80445-6|AAB37797.2|  575|Caenorhabditis elegans Hypothetical pr...    29   1.7  
U41534-3|AAB47595.1| 1119|Caenorhabditis elegans Hypothetical pr...    28   4.0  
U23527-5|AAC46572.2|  915|Caenorhabditis elegans Hypothetical pr...    27   9.3  

>Z73907-1|CAA98124.1| 4753|Caenorhabditis elegans Hypothetical protein
            F29D11.1 protein.
          Length = 4753

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 15/30 (50%), Positives = 19/30 (63%)
 Frame = +3

Query: 387  FAAMGAVPTAYKLDLTSLNLTNFFAIENVK 476
            FAAMG VPTA  +D T+ NL      EN++
Sbjct: 4260 FAAMGVVPTAIAVDYTTGNLFIAAVSENIE 4289


>M96150-1|AAA28105.1| 4753|Caenorhabditis elegans LDL receptor-related
            protein protein.
          Length = 4753

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 15/30 (50%), Positives = 19/30 (63%)
 Frame = +3

Query: 387  FAAMGAVPTAYKLDLTSLNLTNFFAIENVK 476
            FAAMG VPTA  +D T+ NL      EN++
Sbjct: 4260 FAAMGVVPTAIAVDYTTGNLFIAAVSENIE 4289


>U80445-6|AAB37797.2|  575|Caenorhabditis elegans Hypothetical
           protein C50F2.1 protein.
          Length = 575

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = +3

Query: 408 PTAYKLDLTSLNLTNFFAIENVKKL 482
           P    LD++S N+TN F I N+K L
Sbjct: 119 PNLLSLDISSTNITNLFGIGNLKTL 143


>U41534-3|AAB47595.1| 1119|Caenorhabditis elegans Hypothetical
           protein C16A3.7 protein.
          Length = 1119

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +2

Query: 365 GVGTFANVCRYGRCSNCIQIRFN 433
           G+ T  NVC  G+C  C+Q  F+
Sbjct: 593 GIHTCENVCHAGQCRPCLQASFD 615


>U23527-5|AAC46572.2|  915|Caenorhabditis elegans Hypothetical
           protein K09E2.1 protein.
          Length = 915

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = +3

Query: 411 TAYKLDLTSLNLTNFFAIENVKKLALST*DPTTM 512
           +++ L +T    T+F A E  +K+  ST DP T+
Sbjct: 224 SSFGLKVTQFGATSFIATEISEKITTSTQDPPTL 257


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,419,064
Number of Sequences: 27780
Number of extensions: 219157
Number of successful extensions: 433
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 423
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 433
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1166125180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)