Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_pT_F13
         (575 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16H5.06 |rip1||ubiquinol-cytochrome-c reductase complex subu...   194   6e-51
SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated protei...    29   0.49 
SPAC806.06c |||nicotinamide mononucleotide |Schizosaccharomyces ...    26   3.4  
SPACUNK4.09 |||conserved protein|Schizosaccharomyces pombe|chr 1...    26   4.5  
SPBC839.11c |hut1||uridine diphosphate-N-acetylglucosamine trans...    26   4.5  
SPCC645.13 |||transcription elongation regulator|Schizosaccharom...    25   6.0  
SPBC3D6.11c |slx8||ubiquitin-protein ligase E3 Slx8 |Schizosacch...    25   7.9  
SPAC23C4.19 |spt5||transcription elongation factor Spt5|Schizosa...    25   7.9  

>SPBC16H5.06 |rip1||ubiquinol-cytochrome-c reductase complex subunit
           5|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 228

 Score =  194 bits (474), Expect = 6e-51
 Identities = 79/126 (62%), Positives = 103/126 (81%)
 Frame = -2

Query: 412 FVSSMSAAADVLALAKIEIKLAEIPEGKSVTFKWRGKPLFIRHRTADEISTEKAVPVDTL 233
           F++S SA+ADVLA++K E+ L++IPEGK++  KW+GKP+FIRHRT +EI    +V + TL
Sbjct: 91  FLASWSASADVLAMSKAEVDLSKIPEGKNLVVKWQGKPVFIRHRTPEEIQEANSVDISTL 150

Query: 232 RDPQHDDQRTQNPKWLVVIGVCTHLGCVPVANAGEFGGYYCPCHGSHYDASGRIRKGPAP 53
           RDPQ D  R Q P+WLV+IGVCTHLGCVP+  AG++GG++CPCHGSHYD SGRIR+GPAP
Sbjct: 151 RDPQADSDRVQKPEWLVMIGVCTHLGCVPIGEAGDYGGWFCPCHGSHYDISGRIRRGPAP 210

Query: 52  RNXEVP 35
            N  +P
Sbjct: 211 LNLAIP 216


>SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1462

 Score = 29.1 bits (62), Expect = 0.49
 Identities = 22/67 (32%), Positives = 30/67 (44%), Gaps = 2/67 (2%)
 Frame = -3

Query: 354 SWLKFQKESLSP--SNGEENHCLSVTGQQTKSRPRRLCLSTRSVTLSTTINVPKTPSGWS 181
           S+ K QKE  S   SN      L +  + T +   R+   TRS    +T   P  PSG S
Sbjct: 528 SFSKSQKEETSSNSSNSSGTRRLGLPQRATPASRERVLPYTRSQAFHSTSLPPSLPSGHS 587

Query: 180 *SAYVPT 160
            S  +P+
Sbjct: 588 PSIAIPS 594


>SPAC806.06c |||nicotinamide mononucleotide |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 365

 Score = 26.2 bits (55), Expect = 3.4
 Identities = 15/56 (26%), Positives = 29/56 (51%)
 Frame = -2

Query: 409 VSSMSAAADVLALAKIEIKLAEIPEGKSVTFKWRGKPLFIRHRTADEISTEKAVPV 242
           VS     ADV +L ++ + L E+P G +   +   + +F +HR  + +  E  +P+
Sbjct: 71  VSLEKREADVASLGEV-MDLEEVPRGITRQARQLNEYIFPKHRFRNHLVDEGKIPL 125


>SPACUNK4.09 |||conserved protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 339

 Score = 25.8 bits (54), Expect = 4.5
 Identities = 13/47 (27%), Positives = 22/47 (46%), Gaps = 2/47 (4%)
 Frame = +2

Query: 260 GRD--FVCCPVTDKQWFSSPFEGDRLSFWNFSQLDFNLG*SQNISSR 394
           GRD  ++C   + K W  S  + ++ +   FS+L   LG    I  +
Sbjct: 155 GRDLAWICFRESGKHWMVSALDAEKRAIQRFSELFSGLGLEDRIEGK 201


>SPBC839.11c |hut1||uridine diphosphate-N-acetylglucosamine
           transporter Hut1 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 322

 Score = 25.8 bits (54), Expect = 4.5
 Identities = 8/20 (40%), Positives = 15/20 (75%)
 Frame = +2

Query: 143 YRHASQVGTYADHDQPLGVL 202
           +++ S  G +A+HD P+G+L
Sbjct: 150 FQNTSSKGKHAEHDSPIGLL 169


>SPCC645.13 |||transcription elongation
           regulator|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 721

 Score = 25.4 bits (53), Expect = 6.0
 Identities = 11/35 (31%), Positives = 16/35 (45%)
 Frame = -2

Query: 163 HLGCVPVANAGEFGGYYCPCHGSHYDASGRIRKGP 59
           H  CV +A+      YYC    S  D S +++  P
Sbjct: 46  HASCVGLADKDIPESYYCEVCHSRSDVSSQVQNSP 80


>SPBC3D6.11c |slx8||ubiquitin-protein ligase E3 Slx8
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 269

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = +3

Query: 297 NGFPLHLKVTDFPSG 341
           NGFP+    TD+PSG
Sbjct: 48  NGFPVSEDATDYPSG 62


>SPAC23C4.19 |spt5||transcription elongation factor
           Spt5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 990

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -3

Query: 201 KTPSGWS*SAYVPTWDACR*PMLVN 127
           KTPS W+     P W+A + PM+ N
Sbjct: 907 KTPS-WNNGTKTPAWNANQTPMVAN 930


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,123,032
Number of Sequences: 5004
Number of extensions: 40077
Number of successful extensions: 104
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 104
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 246098644
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)