Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P17_pT_F13
(575 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_04_0023 - 19000591-19001234,19003322-19003496 196 1e-50
04_03_0792 + 19693957-19694146,19695614-19696260 195 2e-50
07_03_0865 + 22130880-22130921,22131938-22132170,22132268-221323... 58 4e-09
10_08_0973 - 21963754-21963936,21964089-21964383,21964504-219646... 33 0.16
10_08_0971 - 21949721-21949936,21950051-21950484,21950599-219507... 32 0.38
04_03_0775 + 19462030-19462500,19462674-19462883 29 2.0
11_06_0546 + 24853167-24853880 29 2.7
02_02_0648 - 12619468-12619874,12621432-12621512,12621607-126217... 29 2.7
01_01_0725 - 5668288-5669094,5669724-5669909,5670039-5670296 27 8.1
>02_04_0023 - 19000591-19001234,19003322-19003496
Length = 272
Score = 196 bits (478), Expect = 1e-50
Identities = 86/152 (56%), Positives = 110/152 (72%)
Frame = -2
Query: 490 RQSFTYLIXXXXXXXXXXXXXXXVTHFVSSMSAAADVLALAKIEIKLAEIPEGKSVTFKW 311
+++F Y + V FV SMSA+ DVLALA +E+ L+ I G +VT KW
Sbjct: 108 KRAFAYFVLSGGRFIYASLLRLLVLKFVLSMSASKDVLALASLEVDLSSIEPGTTVTVKW 167
Query: 310 RGKPLFIRHRTADEISTEKAVPVDTLRDPQHDDQRTQNPKWLVVIGVCTHLGCVPVANAG 131
RGKP+FIR RT ++I+ +V + +LRDPQ D +R +NP+WLVVIGVCTHLGC+P+ NAG
Sbjct: 168 RGKPVFIRRRTEEDINLANSVDIGSLRDPQQDAERVKNPEWLVVIGVCTHLGCIPLPNAG 227
Query: 130 EFGGYYCPCHGSHYDASGRIRKGPAPRNXEVP 35
+FGG++CPCHGSHYD SGRIRKGPAP N EVP
Sbjct: 228 DFGGWFCPCHGSHYDISGRIRKGPAPYNLEVP 259
>04_03_0792 + 19693957-19694146,19695614-19696260
Length = 278
Score = 195 bits (475), Expect = 2e-50
Identities = 87/152 (57%), Positives = 109/152 (71%)
Frame = -2
Query: 490 RQSFTYLIXXXXXXXXXXXXXXXVTHFVSSMSAAADVLALAKIEIKLAEIPEGKSVTFKW 311
+++F Y + V FV SMSA+ DVLALA +E+ L+ I G +VT KW
Sbjct: 114 KRAFAYFVLSGGRFIYASLLRLLVLKFVLSMSASKDVLALASLEVDLSSIEPGTTVTVKW 173
Query: 310 RGKPLFIRHRTADEISTEKAVPVDTLRDPQHDDQRTQNPKWLVVIGVCTHLGCVPVANAG 131
RGKP+FIR RT D+I+ +V V +LR PQ D +R +NP+WLVVIGVCTHLGC+P+ NAG
Sbjct: 174 RGKPVFIRRRTEDDIALANSVDVGSLRHPQQDAERVKNPEWLVVIGVCTHLGCIPLPNAG 233
Query: 130 EFGGYYCPCHGSHYDASGRIRKGPAPRNXEVP 35
+FGG++CPCHGSHYD SGRIRKGPAP N EVP
Sbjct: 234 DFGGWFCPCHGSHYDISGRIRKGPAPFNLEVP 265
>07_03_0865 +
22130880-22130921,22131938-22132170,22132268-22132385,
22132474-22132656,22132859-22132960
Length = 225
Score = 58.4 bits (135), Expect = 4e-09
Identities = 27/55 (49%), Positives = 35/55 (63%)
Frame = -2
Query: 172 VCTHLGCVPVANAGEFGGYYCPCHGSHYDASGRIRKGPAPRNXEVPPQQRDMDEG 8
VCTHLGCV NA E + CPCHGS Y+ GR+ +GPAP + + D+D+G
Sbjct: 153 VCTHLGCVVPWNAAE-NKFICPCHGSQYNNQGRVVRGPAPLSLAL--VHADVDDG 204
>10_08_0973 -
21963754-21963936,21964089-21964383,21964504-21964616,
21964729-21964913,21965054-21965201,21965297-21965575,
21965657-21965761,21965936-21966178,21966426-21966486,
21966734-21966792
Length = 556
Score = 33.1 bits (72), Expect = 0.16
Identities = 19/80 (23%), Positives = 33/80 (41%)
Frame = -2
Query: 277 ADEISTEKAVPVDTLRDPQHDDQRTQNPKWLVVIGVCTHLGCVPVANAGEFGGYYCPCHG 98
+ ++ + VP+D + Q R ++ + V+ C H C + G CP HG
Sbjct: 241 SSDLKDDTMVPIDCFEE-QWVIFRGKDGRPGCVMNTCAHRACPLHLGSVNEGRIQCPYHG 299
Query: 97 SHYDASGRIRKGPAPRNXEV 38
Y G+ K P+ + V
Sbjct: 300 WEYSTDGKCEKMPSTKMLNV 319
>10_08_0971 -
21949721-21949936,21950051-21950484,21950599-21950791,
21950909-21951007,21951114-21951191,21951275-21951669,
21954317-21954482,21954840-21954927,21955015-21955127,
21955242-21955426,21955840-21955987,21956071-21956349,
21956425-21956529,21956892-21957137,21957367-21957408,
21957539-21957613
Length = 953
Score = 31.9 bits (69), Expect = 0.38
Identities = 19/74 (25%), Positives = 30/74 (40%)
Frame = -2
Query: 271 EISTEKAVPVDTLRDPQHDDQRTQNPKWLVVIGVCTHLGCVPVANAGEFGGYYCPCHGSH 92
++ + VP+D + Q R ++ + V C H C + G CP HG
Sbjct: 243 DLKDDTMVPIDCFEE-QWVIFRGKDGRPGCVQNTCAHRACPLHLGSVSEGRIQCPFHGWE 301
Query: 91 YDASGRIRKGPAPR 50
Y G+ K PA +
Sbjct: 302 YSTDGKCEKMPATK 315
>04_03_0775 + 19462030-19462500,19462674-19462883
Length = 226
Score = 29.5 bits (63), Expect = 2.0
Identities = 22/92 (23%), Positives = 38/92 (41%), Gaps = 7/92 (7%)
Frame = -2
Query: 286 HRTADEISTEKA--VPVDTLRDPQHDDQRTQNPKWLVVIGVCTHLGCVPVANAGEFG--- 122
HR+ ++ + + VPV L + +H +Q+ NP W + + + A E
Sbjct: 109 HRSKEKETNHRPRNVPVRRLEN-KHYNQQQHNPLWQMSKANGSGFYILHKARCSEIREAH 167
Query: 121 --GYYCPCHGSHYDASGRIRKGPAPRNXEVPP 32
G+ CPC G AP + ++PP
Sbjct: 168 QRGFSCPCKGEEETLEELTTVAAAPASSQIPP 199
>11_06_0546 + 24853167-24853880
Length = 237
Score = 29.1 bits (62), Expect = 2.7
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = -2
Query: 274 DEISTEKAVPVDTLRDPQHDDQ 209
DEI + P+ TL+ PQH DQ
Sbjct: 169 DEIKAHRKQPILTLKQPQHQDQ 190
>02_02_0648 -
12619468-12619874,12621432-12621512,12621607-12621716,
12621896-12622164,12622440-12622567,12622637-12622699,
12623196-12623493
Length = 451
Score = 29.1 bits (62), Expect = 2.7
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = -3
Query: 345 KFQKESLSPSNGEENHCLSVTGQQTKS 265
K +KES++ +N +E HC++ G Q S
Sbjct: 18 KLKKESMARANADELHCITFRGDQPGS 44
>01_01_0725 - 5668288-5669094,5669724-5669909,5670039-5670296
Length = 416
Score = 27.5 bits (58), Expect = 8.1
Identities = 12/33 (36%), Positives = 15/33 (45%)
Frame = -3
Query: 222 STTINVPKTPSGWS*SAYVPTWDACR*PMLVNS 124
S T P+ + W S PTW P +VNS
Sbjct: 251 SPTARTPRMKTDWDESNVQPTWTGSNSPCVVNS 283
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,665,739
Number of Sequences: 37544
Number of extensions: 303325
Number of successful extensions: 776
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 756
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 775
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1340735508
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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