Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P17_pT_F13
(575 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF038618-8|AAB92071.1| 276|Caenorhabditis elegans Iron-sulfur p... 223 7e-59
AY825249-1|AAX24101.1| 728|Caenorhabditis elegans sodium-couple... 29 2.4
AL110485-24|CAB60372.4| 728|Caenorhabditis elegans Hypothetical... 29 2.4
Z84574-8|CAE54891.1| 921|Caenorhabditis elegans Hypothetical pr... 28 4.1
Z84574-7|CAB06544.3| 928|Caenorhabditis elegans Hypothetical pr... 28 4.1
Z46791-5|CAA86755.2| 948|Caenorhabditis elegans Hypothetical pr... 28 4.1
AL022593-4|CAE54889.1| 921|Caenorhabditis elegans Hypothetical ... 28 4.1
AL022593-3|CAA18635.3| 928|Caenorhabditis elegans Hypothetical ... 28 4.1
AL021386-3|CAA16167.1| 330|Caenorhabditis elegans Hypothetical ... 28 5.5
>AF038618-8|AAB92071.1| 276|Caenorhabditis elegans Iron-sulfur
protein protein 1 protein.
Length = 276
Score = 223 bits (545), Expect = 7e-59
Identities = 104/181 (57%), Positives = 128/181 (70%), Gaps = 1/181 (0%)
Frame = -2
Query: 574 DISYPDXSAYRRKETQDPTSKANETIDERQSF-TYLIXXXXXXXXXXXXXXXVTHFVSSM 398
D+++PD S YRR T++ A +T D+R++ T L V VS
Sbjct: 82 DVTFPDMSNYRRDSTKNTQVPARDTEDQRRALPTALYYGAGGVLSLWAGKEVVQTLVSYK 141
Query: 397 SAAADVLALAKIEIKLAEIPEGKSVTFKWRGKPLFIRHRTADEISTEKAVPVDTLRDPQH 218
+ AAD ALA IEI +A+IPEGK+ TF+WRGKP+F++HRT EI+ EKAVPV LR PQH
Sbjct: 142 AMAADQRALASIEINMADIPEGKTKTFEWRGKPVFVKHRTKAEIAKEKAVPVADLRHPQH 201
Query: 217 DDQRTQNPKWLVVIGVCTHLGCVPVANAGEFGGYYCPCHGSHYDASGRIRKGPAPRNXEV 38
DD+R Q +W VVIGVCTHLGCVP+A+AG++GGYYCPCHGSHYDASGRIRKGPAP N V
Sbjct: 202 DDERVQKDEWSVVIGVCTHLGCVPIADAGDYGGYYCPCHGSHYDASGRIRKGPAPLNLHV 261
Query: 37 P 35
P
Sbjct: 262 P 262
>AY825249-1|AAX24101.1| 728|Caenorhabditis elegans sodium-coupled
neutral amino acidtransporter protein.
Length = 728
Score = 29.1 bits (62), Expect = 2.4
Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Frame = -2
Query: 265 STEKAVPVDTLRDPQHDDQ-RTQNPKWLVVIGVCTHLGCVPVANAGEFGGYY 113
STE A+ VD +D R +N KW+VVI C+ L C+ + + G Y+
Sbjct: 472 STEIAL-VDVFCSCIYDQYPRFRNRKWIVVIAWCSVLYCIGLVFSTRAGYYW 522
>AL110485-24|CAB60372.4| 728|Caenorhabditis elegans Hypothetical
protein Y46G5A.30 protein.
Length = 728
Score = 29.1 bits (62), Expect = 2.4
Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Frame = -2
Query: 265 STEKAVPVDTLRDPQHDDQ-RTQNPKWLVVIGVCTHLGCVPVANAGEFGGYY 113
STE A+ VD +D R +N KW+VVI C+ L C+ + + G Y+
Sbjct: 472 STEIAL-VDVFCSCIYDQYPRFRNRKWIVVIAWCSVLYCIGLVFSTRAGYYW 522
>Z84574-8|CAE54891.1| 921|Caenorhabditis elegans Hypothetical
protein F33E2.2b protein.
Length = 921
Score = 28.3 bits (60), Expect = 4.1
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = -1
Query: 293 YPSQDSRRNLDREGCACRHAP*PSARRSTYP 201
YPS+++ L+ +GC C HA P A+ P
Sbjct: 685 YPSRNAPHQLE-DGCCCAHARAPRAKSIAVP 714
>Z84574-7|CAB06544.3| 928|Caenorhabditis elegans Hypothetical
protein F33E2.2a protein.
Length = 928
Score = 28.3 bits (60), Expect = 4.1
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = -1
Query: 293 YPSQDSRRNLDREGCACRHAP*PSARRSTYP 201
YPS+++ L+ +GC C HA P A+ P
Sbjct: 692 YPSRNAPHQLE-DGCCCAHARAPRAKSIAVP 721
>Z46791-5|CAA86755.2| 948|Caenorhabditis elegans Hypothetical
protein C09G5.6 protein.
Length = 948
Score = 28.3 bits (60), Expect = 4.1
Identities = 15/30 (50%), Positives = 16/30 (53%)
Frame = -2
Query: 115 YCPCHGSHYDASGRIRKGPAPRNXEVPPQQ 26
Y P HGS+YD GR PA PPQQ
Sbjct: 152 YRPPHGSNYDNYGR---EPASSRRPYPPQQ 178
>AL022593-4|CAE54889.1| 921|Caenorhabditis elegans Hypothetical
protein F33E2.2b protein.
Length = 921
Score = 28.3 bits (60), Expect = 4.1
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = -1
Query: 293 YPSQDSRRNLDREGCACRHAP*PSARRSTYP 201
YPS+++ L+ +GC C HA P A+ P
Sbjct: 685 YPSRNAPHQLE-DGCCCAHARAPRAKSIAVP 714
>AL022593-3|CAA18635.3| 928|Caenorhabditis elegans Hypothetical
protein F33E2.2a protein.
Length = 928
Score = 28.3 bits (60), Expect = 4.1
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = -1
Query: 293 YPSQDSRRNLDREGCACRHAP*PSARRSTYP 201
YPS+++ L+ +GC C HA P A+ P
Sbjct: 692 YPSRNAPHQLE-DGCCCAHARAPRAKSIAVP 721
>AL021386-3|CAA16167.1| 330|Caenorhabditis elegans Hypothetical
protein F57E7.3 protein.
Length = 330
Score = 27.9 bits (59), Expect = 5.5
Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
Frame = +2
Query: 191 LGVLGTLIVVLRVTERVDRHSLLGRDFVCCP--VTDKQWF 304
LG+ GTL ++ R T+ + H + F C P + DK F
Sbjct: 147 LGLTGTLAILFRTTDSRESHLKVLEKFPCLPKDIIDKPGF 186
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,923,841
Number of Sequences: 27780
Number of extensions: 237806
Number of successful extensions: 798
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 766
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 797
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1194789454
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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