Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_pT_F10
         (847 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6F12.13c |fps1||geranyltranstransferase Fps1|Schizosaccharom...   191   9e-50
SPBC36.06c |spo9||farnesyl pyrophosphate synthetase|Schizosaccha...   168   7e-43
SPAPB24D3.04c |mag1||DNA-3-methyladenine glycosylase Mag1|Schizo...    27   2.5  
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce...    27   3.3  
SPBPJ4664.01 |dps1|SPBPJ694.01|decaprenyl diphosphate synthase s...    27   3.3  
SPBC15D4.09c |||cystathionine gamma-synthase |Schizosaccharomyce...    26   7.7  
SPAC18G6.07c |mra1||ribosome biogenesis protein Mra1|Schizosacch...    26   7.7  

>SPAC6F12.13c |fps1||geranyltranstransferase
           Fps1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 347

 Score =  191 bits (466), Expect = 9e-50
 Identities = 90/246 (36%), Positives = 145/246 (58%), Gaps = 1/246 (0%)
 Frame = -1

Query: 847 LGWCVEMFQAYCIVXDDIMDGSSVRRGMPCWYRRPEVGITCAFNDSLLIHSSLFEFLKTN 668
           LGW VE+ Q++ ++ DDIMD S  RRG PCWY  P VG   A ND+ ++ S+++  LK +
Sbjct: 80  LGWMVELLQSFFLIADDIMDASKTRRGQPCWYLMPGVG-NIAINDAFMVESAIYFLLKKH 138

Query: 667 FRTNPNYMKMFELFNETLWRTSMGQHLDHVTGNRKT-DYSSFTLDRXXXXXXXXXXXXXY 491
           FR    Y+ + ELF++  ++T +GQ LD +T    + D S F+L +             +
Sbjct: 139 FRQESCYVDLIELFHDVTFQTELGQQLDLLTAPEDSVDLSKFSLQKHSFIVIYKTAFYSF 198

Query: 490 NLPVSLGLLLAENVDEKIYKSAQDICLEIGTMFQIQDDFIDCFGDEIKTGKVGTDIQERK 311
            LPV+L + LA     +  K AQDI + +G  FQ+QDD++DC+GD   TGK+GTDI + K
Sbjct: 199 YLPVALAMHLAGVATPENLKCAQDILIILGKYFQVQDDYLDCYGDPTVTGKIGTDILDNK 258

Query: 310 CTWLAVQALQRCTEAQRTVFKACYGSSEPAHVERIKRLYEDLHLPQIYKHQEKAMYDNII 131
           C+W+   AL +CT  QR +    YG  +    +R+K ++E+L++   +++ E++    I 
Sbjct: 259 CSWIINLALAKCTPEQRVILDDNYGRKDSESEKRVKAVFEELNIRGEFENYEESEVSEIK 318

Query: 130 RQIENI 113
           + I+ +
Sbjct: 319 KLIDGV 324


>SPBC36.06c |spo9||farnesyl pyrophosphate
           synthetase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 351

 Score =  168 bits (409), Expect = 7e-43
 Identities = 89/267 (33%), Positives = 142/267 (53%), Gaps = 3/267 (1%)
 Frame = -1

Query: 847 LGWCVEMFQAYCIVXDDIMDGSSVRRGMPCWYRRPEVGITCAFNDSLLIHSSLFEFLKTN 668
           LGW +E+ Q   ++ DDIMD S  RRG+ CWY    VG+  A N+S L+ + +   ++  
Sbjct: 85  LGWLIEILQGCFLMADDIMDQSIKRRGLDCWYL--VVGVRRAINESQLLEACIPLLIRKY 142

Query: 667 FRTNPNYMKMFELFNETLWRTSMGQHLDHVTG-NRKTDYSSFTLDRXXXXXXXXXXXXXY 491
           FR  P Y+ + + F E  + T +GQ  D ++  + +    SF L +             +
Sbjct: 143 FRNMPYYVDLLDTFREVTFLTELGQQEDLLSSRDGEASLRSFDLMKYDFIITYKTSFYSF 202

Query: 490 NLPVSLGLLLAENVDEKIYKSAQDICLEIGTMFQIQDDFIDCFGDEIKTGKVGTDIQERK 311
            LP+   LLL+ N ++K Y +   +   +G  FQ+QDD++DCFGD    GKVG DIQ+ K
Sbjct: 203 YLPIKCALLLSRNSNQKAYDTTIKLSKLLGYYFQVQDDYLDCFGDYTVLGKVGMDIQDNK 262

Query: 310 CTWLAVQALQRCTEAQRTVFKACYGSSEPAHVERIKRLYEDLHLPQIYKHQEKAMYDNII 131
           CTWL   A +  +  Q  + +A YG +   ++  IK+LY +L +P++Y   E  M D+I 
Sbjct: 263 CTWLVCYAEKFASADQLNLLRAHYGKAGSENIAVIKQLYHELQIPELYHKFEDDMVDSIS 322

Query: 130 RQIENIPIEAA--RVLFKKLLDITYNR 56
           ++I+ I       + +F K   + Y R
Sbjct: 323 KEIDLIDESTGLKKCIFTKFFQLIYKR 349


>SPAPB24D3.04c |mag1||DNA-3-methyladenine glycosylase
           Mag1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 228

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
 Frame = -1

Query: 841 WCVEMFQAYCIVXDDIM--DGSSVRRGMPCWYRRPEV 737
           W VEM   + +  DD+M  D  S+R G    +R P++
Sbjct: 150 WTVEMLLIFSLNRDDVMPADDLSIRNGYRYLHRLPKI 186


>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1957

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 18/71 (25%), Positives = 34/71 (47%)
 Frame = -1

Query: 223  AHVERIKRLYEDLHLPQIYKHQEKAMYDNIIRQIENIPIEAARVLFKKLLDITYNRQH*A 44
            A  E I +  EDL      + +++A +DN   ++EN+      + F    +I++ R+  A
Sbjct: 1829 AGAEFIVKFKEDLEKCAAEEKEKQATFDNYSEKVENLGKSIEALYFALNREISF-RKSLA 1887

Query: 43   IR*EMXHNALI 11
            +     HN L+
Sbjct: 1888 LSKSAYHNLLV 1898


>SPBPJ4664.01 |dps1|SPBPJ694.01|decaprenyl diphosphate synthase
           subunit Dps1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 378

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = -1

Query: 847 LGWCVEMFQAYCIVXDDIMDGSSVRRGMP 761
           L    EM     ++ DD++D ++VRRG P
Sbjct: 122 LAQITEMIHIASLLHDDVIDHANVRRGSP 150



 Score = 26.2 bits (55), Expect = 5.8
 Identities = 19/73 (26%), Positives = 33/73 (45%), Gaps = 1/73 (1%)
 Frame = -1

Query: 406 IGTMFQIQDDFIDCFGDEIKTGK-VGTDIQERKCTWLAVQALQRCTEAQRTVFKACYGSS 230
           IGT FQ+ DD +D    +   GK  G D++    T   + A ++  E    +       +
Sbjct: 262 IGTAFQLMDDVLDYTSKDDTLGKAAGADLKLGLATAPVLFAWKKYPELGAMIVNR---FN 318

Query: 229 EPAHVERIKRLYE 191
            P+ ++R + L E
Sbjct: 319 HPSDIQRARSLVE 331


>SPBC15D4.09c |||cystathionine gamma-synthase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 610

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 9/31 (29%), Positives = 19/31 (61%)
 Frame = -1

Query: 217 VERIKRLYEDLHLPQIYKHQEKAMYDNIIRQ 125
           ++R ++  E++H+PQ+Y     + Y  I +Q
Sbjct: 130 IDRNRKYTEEIHIPQVYSVLFPSKYFGIAKQ 160


>SPAC18G6.07c |mra1||ribosome biogenesis protein
           Mra1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 359

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = -1

Query: 424 QDICLEIGTMFQIQDDFIDCFGDE 353
           Q +C+ IG M    DDF D + DE
Sbjct: 307 QSVCIAIGAMAHGPDDFSDGWVDE 330


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,540,903
Number of Sequences: 5004
Number of extensions: 73417
Number of successful extensions: 224
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 214
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 220
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 418457710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)