Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_pT_F09
         (577 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle pr...    27   0.10 
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    26   0.31 
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       23   1.6  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   3.8  
DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    21   6.6  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   8.7  

>EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle
           protein protein.
          Length = 138

 Score = 27.5 bits (58), Expect = 0.10
 Identities = 14/28 (50%), Positives = 17/28 (60%)
 Frame = -2

Query: 327 VVQGSYSVVDPDGTKRTVDYTADPHNGF 244
           V QGS S   PDG + ++ Y AD  NGF
Sbjct: 70  VSQGSDSYTAPDGQQVSITYVAD-ENGF 96


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 25.8 bits (54), Expect = 0.31
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +1

Query: 409 MSVVFLDFSDRGDSGNFGEWGGVRYGTSV 495
           M V +  F+ R  +  +GEW GV +G  V
Sbjct: 472 MKVYYYFFTQRTSTNLWGEWMGVLHGDEV 500


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 10/31 (32%), Positives = 14/31 (45%)
 Frame = +1

Query: 100 GHGSGMHNRSGVHNGRGVHKGTCGVGQRGGD 192
           G G G  +  G   GRG ++G  G   +  D
Sbjct: 79  GRGKGRGHGKGGSRGRGGNRGRTGFNNKNKD 109


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 12/47 (25%), Positives = 21/47 (44%)
 Frame = -2

Query: 330 DVVQGSYSVVDPDGTKRTVDYTADPHNGFNAVVHKEPLAHVAKVAKI 190
           ++   + S +DP  +  ++   A  H+G    V   P A V   AK+
Sbjct: 658 NLASANISQLDPYSSLLSITNLAAEHSGDYTCVAANPAAEVRYTAKL 704


>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 21.4 bits (43), Expect = 6.6
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = -2

Query: 273 DYTADPHNGFNAVVHKEPLAHVAKVAKIAA 184
           DY   P   F+++   +P    AKV++IAA
Sbjct: 59  DYVTLPPEFFDSLWQPDPYFLNAKVSEIAA 88


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = -3

Query: 473  PPHSPKLPLSPRSLKS 426
            PPHSP++ L+  +  S
Sbjct: 1366 PPHSPQITLTATTTNS 1381


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 90,276
Number of Sequences: 438
Number of extensions: 1271
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16626408
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)