Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_pT_F08
         (622 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    25   0.51 
X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.       24   0.89 
EF592537-1|ABQ95983.1|  593|Tribolium castaneum beta-N-acetylglu...    21   6.3  
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    21   8.3  

>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 25.0 bits (52), Expect = 0.51
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = -2

Query: 336 PQHLTCYFTTFTMKSRLYSNY*ENFVDR 253
           P H  C F+ + +KS  Y N    F +R
Sbjct: 309 PTHFYCAFSLYPLKSTFYLNVVRPFPER 336



 Score = 23.8 bits (49), Expect = 1.2
 Identities = 17/65 (26%), Positives = 29/65 (44%), Gaps = 3/65 (4%)
 Frame = +1

Query: 10  IQXVIYK*FLKFCLHQ*LM---WKYRFKIASCIC*FHQQFILLADCRLFIPPWXVSFIKL 180
           +  + Y  F+ F +H  L    + Y F I  C+  F+  FI+     LF+       + L
Sbjct: 81  VHLLFYCPFIIFTVHFLLCTYYFYYAFIILLCVYYFYYAFIIFTVHLLFLLCIYYFVVPL 140

Query: 181 YMVLC 195
           + +LC
Sbjct: 141 FFLLC 145


>X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.
          Length = 524

 Score = 24.2 bits (50), Expect = 0.89
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +2

Query: 212 RHTYEHPESSPAVPLSTKFSQ*FEYN 289
           +H+Y+ P++ PA   ST     F YN
Sbjct: 77  QHSYQSPQTQPARFYSTPIVPHFAYN 102


>EF592537-1|ABQ95983.1|  593|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG2 protein.
          Length = 593

 Score = 21.4 bits (43), Expect = 6.3
 Identities = 11/38 (28%), Positives = 19/38 (50%)
 Frame = -2

Query: 114 LVELADAASNFKPVFPHKLLMQTKFQKLLVYNXLNKTI 1
           LV   +A+ +  P FPH+ L+    +  L  + + K I
Sbjct: 201 LVVTDEASISDAPFFPHRGLLLDTARNFLTVSKIKKHI 238


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
           adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 21.0 bits (42), Expect = 8.3
 Identities = 9/18 (50%), Positives = 9/18 (50%)
 Frame = -2

Query: 255 RGTAGEDSGCSYVCRPKH 202
           R    ED   SY CR KH
Sbjct: 188 RDVGPEDGYKSYQCRTKH 205


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 145,076
Number of Sequences: 336
Number of extensions: 3140
Number of successful extensions: 11
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15875032
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)