Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_pT_F08
         (622 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC27F1.05c |||aminotransferase class-III, unknown specificty|S...    27   2.9  
SPAC23H3.13c |gpa2|git8|heterotrimeric G protein alpha-2 subunit...    25   6.7  
SPBC32H8.13c |mok12||alpha-1,3-glucan synthase Mok12|Schizosacch...    25   6.7  
SPBC25H2.06c |hrf1||COPII-coated vesicle component Hrf1 |Schizos...    25   8.8  
SPAC6B12.06c |||conserved fungal protein|Schizosaccharomyces pom...    25   8.8  

>SPAC27F1.05c |||aminotransferase class-III, unknown
           specificty|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 484

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = +2

Query: 179 YIWYCVQKCFGRHTY 223
           Y+W C+QKCF    Y
Sbjct: 109 YVWDCLQKCFDAKLY 123


>SPAC23H3.13c |gpa2|git8|heterotrimeric G protein alpha-2 subunit
           Gpa2 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 354

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = +3

Query: 408 LMMWISIFNREWILTDKRI*FLYFFNILGSLIEHV 512
           + ++ SI N +W +    I FL  F++    +EHV
Sbjct: 247 ISLFDSIINSQWFMHSSIILFLNKFDLFRKKLEHV 281


>SPBC32H8.13c |mok12||alpha-1,3-glucan synthase
            Mok12|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2352

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = +3

Query: 423  SIFNREWILTDKRI*FLYFFNILGSLIEHV 512
            SIFN E  +  K + F + FN+L S+I +V
Sbjct: 1351 SIFNIEKDICTKYVQFGHVFNLLHSIISYV 1380


>SPBC25H2.06c |hrf1||COPII-coated vesicle component Hrf1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 293

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +1

Query: 121 ILLADCRLFIPPWXVSFIKLYMVLCS 198
           IL +  +LF  PW   F+ LYM L +
Sbjct: 217 ILTSLSKLFEMPWVTRFVFLYMYLAT 242


>SPAC6B12.06c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 117

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -2

Query: 414 SSEYCKENLKPTRKMYQYWNNRK 346
           S E+ K+N+   RK+  YWN +K
Sbjct: 25  SIEWKKQNIAVKRKIGGYWNPKK 47


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,501,007
Number of Sequences: 5004
Number of extensions: 50996
Number of successful extensions: 109
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 109
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 273658928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)