Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_pT_F08
         (622 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_1194 + 10275700-10275901,10276263-10276352,10277097-102771...    28   6.9  
04_01_0286 + 3800617-3801720,3801945-3801989,3802063-3802203,380...    27   9.1  
03_06_0290 + 32878040-32880193,32881607-32881720                       27   9.1  
01_01_0205 + 1764034-1767601,1767934-1767944                           27   9.1  

>06_01_1194 +
           10275700-10275901,10276263-10276352,10277097-10277125,
           10277316-10277362,10277683-10277735,10277949-10277962
          Length = 144

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 8/32 (25%), Positives = 21/32 (65%)
 Frame = -3

Query: 260 WIEELQVKIQGVHMCVVQSIFEHSTIYNLMKL 165
           W+   +++I G+ +C+    FE + +YN++++
Sbjct: 83  WLFLAEIQIGGLELCLCDHTFELNMVYNIIEV 114


>04_01_0286 +
           3800617-3801720,3801945-3801989,3802063-3802203,
           3802368-3802397,3802519-3803025
          Length = 608

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 18/47 (38%), Positives = 26/47 (55%), Gaps = 4/47 (8%)
 Frame = -3

Query: 290 DCTQITERILWIEELQ----VKIQGVHMCVVQSIFEHSTIYNLMKLT 162
           D + +T+++LW+EELQ    V I+    C V S+    TI N   LT
Sbjct: 248 DVSGLTKQLLWVEELQDWETVFIKPKASCDVSSVCGPYTICNDNALT 294


>03_06_0290 + 32878040-32880193,32881607-32881720
          Length = 755

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 18/45 (40%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
 Frame = -2

Query: 453 QLRSIPD*KY*-STSSEYCKEN-LKPTRKMYQYWNNRKHTAPQHL 325
           QLR IPD  +       +CK N LK  RK++Q     K  + QHL
Sbjct: 267 QLRCIPDSSFCVQVLPLFCKFNKLKEARKLHQMMKEYKLQSDQHL 311


>01_01_0205 + 1764034-1767601,1767934-1767944
          Length = 1192

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 16/42 (38%), Positives = 23/42 (54%)
 Frame = -2

Query: 153 GNE*STICKKDELLVELADAASNFKPVFPHKLLMQTKFQKLL 28
           GN   +IC    L++ LA   +NF   FP  L+ QT F+ +L
Sbjct: 834 GNIPHSICNSSLLVLNLAH--NNFSGPFPSCLMEQTYFRNIL 873


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,734,474
Number of Sequences: 37544
Number of extensions: 278975
Number of successful extensions: 497
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 487
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 497
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1502076244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)