Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_pT_F08
         (622 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U29376-5|AAA68709.2|  936|Caenorhabditis elegans Protein kinase ...    29   2.7  
AF039712-2|AAK21401.1|  401|Caenorhabditis elegans Hypothetical ...    28   6.2  
Z92809-1|CAB07270.1|  286|Caenorhabditis elegans Hypothetical pr...    27   8.2  

>U29376-5|AAA68709.2|  936|Caenorhabditis elegans Protein kinase c
           protein 2, isoformc protein.
          Length = 936

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 16/50 (32%), Positives = 24/50 (48%)
 Frame = +3

Query: 99  LLIPPTVHPSCRLSTIHSPMXCKFH*VIYGTVFKNALDDTHMNTLNLHLQ 248
           LL+P   H    LS IHSP+      V +  +FKN    +  N + + L+
Sbjct: 838 LLLPYLSHLQLTLSAIHSPLLLLSASVFFKFLFKNNFSQSPYNKIKVLLK 887


>AF039712-2|AAK21401.1|  401|Caenorhabditis elegans Hypothetical
           protein F54D7.3 protein.
          Length = 401

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 15/37 (40%), Positives = 22/37 (59%)
 Frame = +3

Query: 393 SPYNILMMWISIFNREWILTDKRI*FLYFFNILGSLI 503
           +PY+ILM    + + +WI  D R  F+Y F +L S I
Sbjct: 267 TPYSILMFLHFLRHTDWIPKDIRK-FIYAFAVLNSAI 302


>Z92809-1|CAB07270.1|  286|Caenorhabditis elegans Hypothetical
           protein R17.1 protein.
          Length = 286

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 18/46 (39%), Positives = 26/46 (56%), Gaps = 3/46 (6%)
 Frame = +3

Query: 264 NSLSNLSTICFSL*KW*N-SRSGVEVL--YVCDCSNTDTFSELALN 392
           ++L  L+ IC  L  W N S   +E+L  Y  + SN D F+ +ALN
Sbjct: 192 HTLLPLTDICLFLKHWINGSNQWLEILIMYAQNGSNLDEFTTIALN 237


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,632,520
Number of Sequences: 27780
Number of extensions: 280371
Number of successful extensions: 570
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 559
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 570
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1353389824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)