Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P17_pT_F07
(696 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_04_0016 + 16461542-16461566,16462701-16462732,16463015-164631... 143 1e-34
07_03_1580 + 27888275-27888360,27888755-27888871,27888964-278890... 141 6e-34
07_03_1260 - 25260872-25261101,25261199-25261312,25261473-252615... 132 2e-31
01_06_1167 - 35062766-35062870,35063165-35063228,35063647-350637... 36 0.023
02_04_0317 + 21996324-21996681,21996833-21996859,21997299-219982... 29 3.5
>03_04_0016 +
16461542-16461566,16462701-16462732,16463015-16463100,
16463189-16463305,16463399-16463474,16463695-16463818,
16464482-16464595,16464700-16464947
Length = 273
Score = 143 bits (347), Expect = 1e-34
Identities = 87/205 (42%), Positives = 112/205 (54%), Gaps = 5/205 (2%)
Frame = -3
Query: 667 MAVGDVKTAQGLNDLNQYLAEKSYVSGYTPSQADVQVFEQVGKAPAANLPHVLRWYNQIA 488
+ + +V + GL L++YL +SY+SGY S+ D+ VF + APAA+ +V RWY+ I+
Sbjct: 22 ITLSNVNSEAGLQKLDEYLLTRSYISGYQASKDDMTVFTSLPSAPAASYVNVTRWYDHIS 81
Query: 487 -----SYTSAERKTWSQGTSPLXXXXXXXXXXXXXXXXXXXDVDLFGSGXXXXXXXXXXX 323
S +AE + ++ DVDLFG
Sbjct: 82 ALLRSSGVTAEGEGVKVESTACSVSPTADQKAPAADEEDDDDVDLFGEETEEEKKAAEE- 140
Query: 322 XXXRLKAYADKKSKKPALIAKSSILLDVKPWDDETDMKEMENQVRTIEMEGLLWGASKLV 143
+A A K S K KSS+LLDVKPWDDETDM ++E VR ++MEGLLWGASKLV
Sbjct: 141 -----RAAAVKASGKKKESGKSSVLLDVKPWDDETDMAKLEEAVRNVKMEGLLWGASKLV 195
Query: 142 PVGYGINKLQIMCVIEDDKVXVDLL 68
PVGYGI KLQIM I DD V VD L
Sbjct: 196 PVGYGIKKLQIMMTIVDDLVSVDSL 220
>07_03_1580 +
27888275-27888360,27888755-27888871,27888964-27889045,
27889710-27889821,27889958-27890071,27890163-27890326
Length = 224
Score = 141 bits (341), Expect = 6e-34
Identities = 84/204 (41%), Positives = 109/204 (53%), Gaps = 4/204 (1%)
Frame = -3
Query: 655 DVKTAQGLNDLNQYLAEKSYVSGYTPSQADVQVFEQVGKAPAANLPHVLRWYNQIASYTS 476
D+ TA GL L Q+L+ K+YVSG S+ D++VF V P A P+ RWY+ +A+ +
Sbjct: 7 DLHTADGLKALEQHLSGKTYVSGNAISKDDIKVFAAVPSKPGAEFPNAARWYDTVAAALA 66
Query: 475 AERKTWSQGTS----PLXXXXXXXXXXXXXXXXXXXDVDLFGSGXXXXXXXXXXXXXXRL 308
+ + G + D+DLFG
Sbjct: 67 SRFPGKAVGVNLPGGGAASSAAAAAPAAKDADEDDDDLDLFGDETEEDKKAAD------- 119
Query: 307 KAYADKKSKKPALIAKSSILLDVKPWDDETDMKEMENQVRTIEMEGLLWGASKLVPVGYG 128
+ A K S K KSS+LLDVKPWDDETDMK++E VR+++MEGL WGASKLVPVGYG
Sbjct: 120 ERAASKASSKKKESGKSSVLLDVKPWDDETDMKKLEEAVRSVQMEGLTWGASKLVPVGYG 179
Query: 127 INKLQIMCVIEDDKVXVDLLTRKN 56
I KLQIM I DD V VD L ++
Sbjct: 180 IKKLQIMLTIVDDLVSVDSLIEEH 203
>07_03_1260 -
25260872-25261101,25261199-25261312,25261473-25261596,
25261755-25261839,25261917-25262033,25262122-25262207
Length = 251
Score = 132 bits (320), Expect = 2e-31
Identities = 84/204 (41%), Positives = 105/204 (51%), Gaps = 8/204 (3%)
Frame = -3
Query: 655 DVKTAQGLNDLNQYLAEKSYVSGYTPSQADVQVFEQVGKAPAANLPHVLRWYNQI----- 491
+V + GL L++YL +SY+SGY S D+ V+ AP+++ +V RW+ I
Sbjct: 7 NVSSEAGLKKLDEYLLTRSYISGYQASNDDLAVYSAFSTAPSSSYTNVARWFTHIDALLR 66
Query: 490 ASYTSAER---KTWSQGTSPLXXXXXXXXXXXXXXXXXXXDVDLFGSGXXXXXXXXXXXX 320
S +A+ K S DVDLFG
Sbjct: 67 LSGVTADGQGVKVESTAVPSASTPDVADAKAPAADDDDDDDVDLFGEETEEEKKAAEE-- 124
Query: 319 XXRLKAYADKKSKKPALIAKSSILLDVKPWDDETDMKEMENQVRTIEMEGLLWGASKLVP 140
+A A K S K KSS+LLDVKPWDDETDM ++E VR ++MEGLLWGASKLVP
Sbjct: 125 ----RAAAVKASGKKKESGKSSVLLDVKPWDDETDMTKLEEAVRNVKMEGLLWGASKLVP 180
Query: 139 VGYGINKLQIMCVIEDDKVXVDLL 68
VGYGI KLQIM I DD V VD L
Sbjct: 181 VGYGIKKLQIMMTIVDDLVSVDSL 204
>01_06_1167 -
35062766-35062870,35063165-35063228,35063647-35063738,
35064137-35064205,35064322-35064412,35064509-35064732,
35065064-35065180,35065583-35065651,35066172-35066237,
35066335-35066505,35066581-35066661,35067620-35067700
Length = 409
Score = 36.3 bits (80), Expect = 0.023
Identities = 22/57 (38%), Positives = 32/57 (56%), Gaps = 9/57 (15%)
Frame = -3
Query: 634 LNDLNQYLAEKSYV--SGYTPSQADVQVFEQV-------GKAPAANLPHVLRWYNQI 491
L +LNQ L++KS + +G+ PS AD+ VF + G+ PHVLRW + I
Sbjct: 76 LGNLNQDLSQKSVLLGNGFKPSVADIVVFATIQVFVSHLGENELQKYPHVLRWMDYI 132
>02_04_0317 +
21996324-21996681,21996833-21996859,21997299-21998227,
21998317-21999162
Length = 719
Score = 29.1 bits (62), Expect = 3.5
Identities = 18/59 (30%), Positives = 34/59 (57%), Gaps = 5/59 (8%)
Frame = +2
Query: 512 YVGKVSGRRLANLLKYLNISLR-----RSVSRHVAFLS*ILVQVIETLGGFNVSYSHSF 673
Y G+VS L+ LK+L+ SLR R V+R A L++++ ++G ++ ++H +
Sbjct: 61 YPGRVSRWWLSQSLKHLDASLRRLGASRLVTRRSADAVVALIELVRSIGATHLFFNHLY 119
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,138,857
Number of Sequences: 37544
Number of extensions: 349532
Number of successful extensions: 907
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 880
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 907
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1780264028
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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