Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_pT_F03
         (765 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase Tor2|S...    28   1.3  
SPAC12G12.12 |||NST UDP-galactose transporter|Schizosaccharomyce...    26   6.8  
SPCC794.04c |||membrane transporter|Schizosaccharomyces pombe|ch...    25   9.0  

>SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase
            Tor2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2337

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
 Frame = +2

Query: 218  ILTVEHKSISNARVEYENGFLVKGVDVIAQPLPSAVTSDLY--LWI 349
            +L +EH+ I     +Y+   L++ V+V    L S    DLY  LW+
Sbjct: 2062 LLNIEHRLIIQMAPDYDRLTLLQKVEVFEYALLSTTGQDLYRVLWL 2107


>SPAC12G12.12 |||NST UDP-galactose transporter|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 324

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +1

Query: 577 FLPFTLIVFSTFQYHNICK 633
           FL F L+++  F YH+I K
Sbjct: 300 FLGFVLLIYGIFTYHSIIK 318


>SPCC794.04c |||membrane transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 547

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +1

Query: 496 CLYFIFTAKL*GSCKVKYPLC*ARFGF 576
           C+Y +F   L   C V YPL   ++GF
Sbjct: 345 CMYLVFINILLYICMVGYPLIFYQYGF 371


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,955,535
Number of Sequences: 5004
Number of extensions: 58245
Number of successful extensions: 132
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 132
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 367316502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)