Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_pT_E24
         (770 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z97628-3|CAB10727.1|  819|Caenorhabditis elegans Hypothetical pr...    31   0.91 
Z79755-13|CAB02114.1|  819|Caenorhabditis elegans Hypothetical p...    31   0.91 
Z47068-6|CAA87334.2|  272|Caenorhabditis elegans Hypothetical pr...    31   1.2  

>Z97628-3|CAB10727.1|  819|Caenorhabditis elegans Hypothetical
           protein F43G9.12 protein.
          Length = 819

 Score = 31.1 bits (67), Expect = 0.91
 Identities = 18/63 (28%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
 Frame = +3

Query: 18  SSVFHKFLSSSFQGLAAIXPXSLFLKVSQPTCLGE--YHWF*DKCFLSCNDLVKSINQIN 191
           S  F+ FL++  + +       LF+ +  P  L +     F D+ F +C  L+KSIN ++
Sbjct: 667 SKQFNAFLNAIRERICDCISEDLFMPIFMPNALEQPICRQFHDRQFWTCIKLIKSINALS 726

Query: 192 SLL 200
            L+
Sbjct: 727 PLI 729


>Z79755-13|CAB02114.1|  819|Caenorhabditis elegans Hypothetical
           protein F43G9.12 protein.
          Length = 819

 Score = 31.1 bits (67), Expect = 0.91
 Identities = 18/63 (28%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
 Frame = +3

Query: 18  SSVFHKFLSSSFQGLAAIXPXSLFLKVSQPTCLGE--YHWF*DKCFLSCNDLVKSINQIN 191
           S  F+ FL++  + +       LF+ +  P  L +     F D+ F +C  L+KSIN ++
Sbjct: 667 SKQFNAFLNAIRERICDCISEDLFMPIFMPNALEQPICRQFHDRQFWTCIKLIKSINALS 726

Query: 192 SLL 200
            L+
Sbjct: 727 PLI 729


>Z47068-6|CAA87334.2|  272|Caenorhabditis elegans Hypothetical
           protein F15G9.5 protein.
          Length = 272

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 11/16 (68%), Positives = 12/16 (75%)
 Frame = -2

Query: 517 ELDNYCVLCCGNI*HK 470
           E DNYC LCCGN  H+
Sbjct: 73  EEDNYCYLCCGNSEHQ 88


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,642,403
Number of Sequences: 27780
Number of extensions: 314777
Number of successful extensions: 580
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 569
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 580
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1851132448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)