Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P17_pT_E19
(797 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_1458 + 37512954-37513112,37513217-37513324,37513357-375134... 295 2e-80
05_04_0448 - 21349877-21349990,21350263-21350338,21350418-213505... 291 4e-79
03_02_0486 - 8811539-8811610,8811725-8812231,8812327-8812551,881... 249 2e-66
06_03_1034 - 27044892-27044983,27045189-27045216,27045514-270459... 175 3e-44
04_02_0036 - 9033411-9033746,9033961-9034032,9034122-9034222,903... 81 8e-16
07_03_1690 - 28716998-28717091,28717203-28717897,28718264-287184... 31 1.4
05_07_0076 - 27520152-27520379,27520785-27521096,27521194-275213... 29 4.3
02_02_0173 - 7433744-7433775,7434002-7434241,7434548-7437410 28 9.9
>01_06_1458 +
37512954-37513112,37513217-37513324,37513357-37513431,
37513520-37513581,37513690-37513756,37514161-37514274,
37514357-37514443,37514571-37514641,37514718-37514783,
37514941-37515027,37515127-37515202,37515321-37515424,
37515550-37515583
Length = 369
Score = 295 bits (725), Expect = 2e-80
Identities = 140/249 (56%), Positives = 181/249 (72%), Gaps = 1/249 (0%)
Frame = -1
Query: 797 FINMXKSSFTTCLLVSEENQTVLQVETERRGKYVVCFDPLDGSSNIECLVSVGSIFAIYK 618
F+ SS TC+LVSEE++ V+ RGKY VCFDPLDGSSNI+C VS+G+IF IY
Sbjct: 104 FVKALVSSGRTCVLVSEEDEEATFVDPALRGKYCVCFDPLDGSSNIDCGVSIGTIFGIYM 163
Query: 617 KKSEGDPVESDALKPGRELVAAGYALYGSATMMVLSLGKGKGVNGFMYDPSIGEFILTDP 438
K + + D L+PG+ +VAAGY +YGS+ +VLS G G VNGF DPS+GEFILT P
Sbjct: 164 IKDKENVTLEDVLQPGKNMVAAGYCMYGSSCTLVLSTGNG--VNGFTLDPSLGEFILTHP 221
Query: 437 NMKIPEKGKIYSINEGYAAEWDKGLQDYIEDKKRPKTGKA-YGARYVGSMVADVHRTIKY 261
++KIP+KGKIYS+NEG A WD+ ++E K PK G + RY+GSMVADVHRT+ Y
Sbjct: 222 DIKIPKKGKIYSVNEGNAKNWDEPTAKFVEKCKFPKDGSSPKSLRYIGSMVADVHRTLLY 281
Query: 260 GGIFMYPATKSAPNGKLRLLYECNPMSFIVTEAGGLATNGKVPILDIVPSSIHQRVPCYL 81
GG+F+YPA K +PNGKLR+LYE PMSF++ +AGG + GK LD+VP+ IH+R P +L
Sbjct: 282 GGVFLYPADKKSPNGKLRVLYEVFPMSFLMEQAGGQSFTGKERALDLVPTKIHERSPIFL 341
Query: 80 GSKKDVEEL 54
GS +DVEE+
Sbjct: 342 GSFEDVEEI 350
>05_04_0448 -
21349877-21349990,21350263-21350338,21350418-21350504,
21350706-21350771,21350855-21350925,21351030-21351116,
21351201-21351314,21351612-21351678,21351807-21351868,
21351960-21352085,21352091-21352381
Length = 386
Score = 291 bits (714), Expect = 4e-79
Identities = 138/249 (55%), Positives = 177/249 (71%), Gaps = 1/249 (0%)
Frame = -1
Query: 797 FINMXKSSFTTCLLVSEENQTVLQVETERRGKYVVCFDPLDGSSNIECLVSVGSIFAIYK 618
F+ SS TC+LVSEEN+ + V+ RGKY VCFDPLDGSSNI+C VS+G+IF IY
Sbjct: 129 FVKALVSSGRTCVLVSEENEEAIIVDAPLRGKYCVCFDPLDGSSNIDCGVSIGTIFGIYM 188
Query: 617 KKSEGDPVESDALKPGRELVAAGYALYGSATMMVLSLGKGKGVNGFMYDPSIGEFILTDP 438
K + + D L+PG +++AAGY +YGS+ +VLS G G VNGF DPS+GEFILT P
Sbjct: 189 IKDKDNVTLDDVLQPGTDMLAAGYCMYGSSCTLVLSTGNG--VNGFTLDPSLGEFILTHP 246
Query: 437 NMKIPEKGKIYSINEGYAAEWDKGLQDYIEDKKRPKTGK-AYGARYVGSMVADVHRTIKY 261
N+KIP +GKIYS+NEG A WD ++E K P+ G + RY+GSMVADVHRT+ Y
Sbjct: 247 NIKIPNRGKIYSVNEGNAKNWDAPTAKFVEKCKFPQDGSPSKSLRYIGSMVADVHRTLLY 306
Query: 260 GGIFMYPATKSAPNGKLRLLYECNPMSFIVTEAGGLATNGKVPILDIVPSSIHQRVPCYL 81
GGIF+YPA + +PNGKLR+LYE PMSF++ +AGG A GK L++VP IH R P +L
Sbjct: 307 GGIFLYPADQKSPNGKLRVLYEVFPMSFLMEQAGGQAFTGKQRALELVPRKIHDRSPIFL 366
Query: 80 GSKKDVEEL 54
GS DVE++
Sbjct: 367 GSYDDVEDI 375
>03_02_0486 -
8811539-8811610,8811725-8812231,8812327-8812551,
8812648-8813064
Length = 406
Score = 249 bits (609), Expect = 2e-66
Identities = 130/267 (48%), Positives = 169/267 (63%), Gaps = 15/267 (5%)
Frame = -1
Query: 797 FINMXKSSFTTCLLVSEENQTVLQVETERRGKYVVCFDPLDGSSNIECLVSVGSIFAIYK 618
F N KSS T ++ SEE + VE G Y+V FDPLDGSSNI+ VS GSIF IY
Sbjct: 141 FSNCLKSSGRTGVIASEEEDVPVAVEESYSGNYIVVFDPLDGSSNIDAAVSTGSIFGIYS 200
Query: 617 KKSEG----------DPVESDAL----KPGRELVAAGYALYGSATMMVLSLGKGKGVNGF 480
E D VE + +PG L+AAGY +Y S+ + VL++G G V F
Sbjct: 201 PNDECLADIADDQNLDQVEQRCIVSVCQPGSNLLAAGYCMYSSSVIFVLTIGTGVYV--F 258
Query: 479 MYDPSIGEFILTDPNMKIPEKGKIYSINEGYAAEWDKGLQDYIEDKKRP-KTGKAYGARY 303
DP GEF+LT ++IP+ GKIY+ NEG A WD L+ Y++ K P +GK Y ARY
Sbjct: 259 TLDPMYGEFVLTQEKVQIPKAGKIYAFNEGNYALWDDKLKSYMDSLKEPGPSGKPYSARY 318
Query: 302 VGSMVADVHRTIKYGGIFMYPATKSAPNGKLRLLYECNPMSFIVTEAGGLATNGKVPILD 123
+GS+V D HRT+ YGGI+ YP + + NGKLRLLYEC PMSFIV +AGG ++G ILD
Sbjct: 319 IGSLVGDFHRTLLYGGIYGYPRDQKSKNGKLRLLYECAPMSFIVEQAGGKGSDGHQRILD 378
Query: 122 IVPSSIHQRVPCYLGSKKDVEELLNYL 42
I+P+ IHQRVP Y+GS ++VE++ +L
Sbjct: 379 IMPTEIHQRVPLYIGSVEEVEKVEKFL 405
>06_03_1034 -
27044892-27044983,27045189-27045216,27045514-27045908,
27046224-27046312,27046352-27046620,27047037-27047270
Length = 368
Score = 175 bits (426), Expect = 3e-44
Identities = 101/252 (40%), Positives = 145/252 (57%), Gaps = 2/252 (0%)
Frame = -1
Query: 794 INMXKSSFTTCLLVSEENQTVLQVETERRGKYVVCFDPLDGSSNIECLVSVGSIFAIYKK 615
++ + S ++ SEEN + V + YVV DPLDGS NIE + G+IF IY +
Sbjct: 83 LSSLRRSGKVAVMASEENHLPIWVSND--SPYVVVTDPLDGSRNIEVSIPTGTIFGIYNR 140
Query: 614 KSEGDPVESDALKPGRELVAAGYALYGSATMMVLSLGKGKGVNGFMYDPSIGEFILTDPN 435
+E D + + L S T +V S G G G +GF D GEF+LT P+
Sbjct: 141 LAELDHLPEEERAQLNSLQ--------SGTHLVAS-GFGAGTHGFTLDHLTGEFVLTHPS 191
Query: 434 MKIPEKGKIYSINEGYAAEWDKGLQDYIEDKKRPKTG--KAYGARYVGSMVADVHRTIKY 261
++IP +G+IYS+N+ +W +GL+ YI+ ++ K K Y ARYV S+VAD HRT+ Y
Sbjct: 192 IQIPPRGQIYSVNDARYFDWPEGLRKYIDTIRQGKGQHPKKYSARYVCSLVADFHRTLIY 251
Query: 260 GGIFMYPATKSAPNGKLRLLYECNPMSFIVTEAGGLATNGKVPILDIVPSSIHQRVPCYL 81
GG+ M P LRL+YE NP+SF+ +AGG ++GK IL I P +HQR+P +L
Sbjct: 252 GGVAMNP------RDHLRLVYEANPLSFLAEQAGGRGSDGKSRILSIQPVKLHQRLPLFL 305
Query: 80 GSKKDVEELLNY 45
G +D+ EL +Y
Sbjct: 306 GGMEDMLELESY 317
>04_02_0036 -
9033411-9033746,9033961-9034032,9034122-9034222,
9034309-9034530,9034832-9034913,9035029-9035214,
9035311-9035445,9035543-9035641
Length = 410
Score = 81.4 bits (192), Expect = 8e-16
Identities = 72/237 (30%), Positives = 113/237 (47%), Gaps = 22/237 (9%)
Frame = -1
Query: 707 GKYVVCFDPLDGSSNIECLVSVGSIFAIYKKKSEGDPVESDALKPGRELVAAGYALYGSA 528
G + V FDPLDGSS ++ +VG+IF ++ GD + G + VAA +YG
Sbjct: 168 GGFSVAFDPLDGSSIVDTNFTVGTIFGVWP----GDKLTGVT---GGDQVAAAMGIYGPR 220
Query: 527 TMMVLSLGKGKGVNGFMYDPSIGEFILTDPNMKIPEKGKIYSINEGYAA----EWDKGLQ 360
T +++L G + F+ G++ I E GK++S A E+DK +
Sbjct: 221 TTYIIALKDCPGTHEFLLLDE-GKWQHVQDTTTIGE-GKMFSPGNLRATFDNPEYDKLIN 278
Query: 359 DYIEDKKRPKTGKAYGARYVGSMVADVHRTI--KYG-----GIFMYP-----------AT 234
Y+++K Y RY G MV DV++ KY G FM T
Sbjct: 279 YYVKEK--------YTLRYTGGMVPDVNQNCYEKYEMPTLMGSFMMQIIVKEKGIFTNVT 330
Query: 233 KSAPNGKLRLLYECNPMSFIVTEAGGLATNGKVPILDIVPSSIHQRVPCYLGSKKDV 63
KLRLL+E P+ F++ +AGG +++GK +LD V +++ +R GSK ++
Sbjct: 331 SPTAKAKLRLLFEVAPLGFLIEKAGGYSSDGKQSVLDKVINNLDERTQVAYGSKNEI 387
>07_03_1690 -
28716998-28717091,28717203-28717897,28718264-28718446,
28718552-28719585,28719805-28719978,28720051-28720168,
28720339-28720521,28720647-28720739,28720981-28721166,
28722247-28722507
Length = 1006
Score = 30.7 bits (66), Expect = 1.4
Identities = 30/104 (28%), Positives = 48/104 (46%), Gaps = 7/104 (6%)
Frame = -1
Query: 710 RGKYVVCFDPLDGSSNIECLVSVGSIFAIYKKKSEGDPVESDALKPGRELVAAGYALYGS 531
R KY+ DP+ S+N+ VS GS + I S G S L +L+ ++G
Sbjct: 316 RPKYLNIIDPIKSSNNLGRSVSKGSFYRIRGAFSFGAQNLSQILMLPTDLIPT--EIFGF 373
Query: 530 ATMMVLSLGKGK----GVNGFMYDPSI---GEFILTDPNMKIPE 420
+ S G+GK G NG ++PS+ E+ L + + + E
Sbjct: 374 FVNTLKSHGRGKRSDVGNNG-SFEPSLDPESEYALWEDSSDVKE 416
>05_07_0076 -
27520152-27520379,27520785-27521096,27521194-27521333,
27521893-27521956,27522071-27522277,27522350-27522493,
27522578-27522709,27522880-27524294,27524647-27524920,
27526096-27526129,27527028-27527059
Length = 993
Score = 29.1 bits (62), Expect = 4.3
Identities = 14/39 (35%), Positives = 21/39 (53%)
Frame = +3
Query: 444 GKNELSYRRVVHEAVHALALSQRQDHHGSRTIQGIARSD 560
G + L+ H H + LS+R + SRTIQG+ + D
Sbjct: 81 GNSPLALALYTHWFYHNIDLSERLNTRKSRTIQGLGKMD 119
>02_02_0173 - 7433744-7433775,7434002-7434241,7434548-7437410
Length = 1044
Score = 27.9 bits (59), Expect = 9.9
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = -1
Query: 158 GLATNGKVPILDIVPSSIHQRVPCYLGSKKDVEEL 54
GL T + LD+ +++H R+P LGS +E +
Sbjct: 137 GLGTLPNLSSLDLTSNNLHGRIPPLLGSSSALESV 171
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,781,206
Number of Sequences: 37544
Number of extensions: 550329
Number of successful extensions: 1565
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1500
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1553
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2162420256
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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