Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P17_pT_E01
(642 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U64836-6|AAG24056.2| 201|Caenorhabditis elegans Hypothetical pr... 30 1.6
Z73098-8|CAA97334.2| 303|Caenorhabditis elegans Hypothetical pr... 29 2.1
U80027-20|AAC48113.2| 400|Caenorhabditis elegans Hypothetical p... 29 2.8
Z70038-1|CAA93884.1| 2219|Caenorhabditis elegans Hypothetical pr... 29 3.7
U50313-2|AAY86230.1| 883|Caenorhabditis elegans Inositol 1,4,5-... 29 3.7
U50313-1|AAY86229.1| 923|Caenorhabditis elegans Inositol 1,4,5-... 29 3.7
AF125463-1|AAD12861.2| 263|Caenorhabditis elegans Hypothetical ... 28 6.5
U80029-19|AAB37598.1| 139|Caenorhabditis elegans Hypothetical p... 27 8.6
U28941-9|AAC71106.1| 452|Caenorhabditis elegans Hypothetical pr... 27 8.6
AF003385-5|AAB54245.1| 494|Caenorhabditis elegans Hypothetical ... 27 8.6
>U64836-6|AAG24056.2| 201|Caenorhabditis elegans Hypothetical
protein F10G2.1 protein.
Length = 201
Score = 29.9 bits (64), Expect = 1.6
Identities = 9/21 (42%), Positives = 17/21 (80%)
Frame = -2
Query: 455 YMSRDFTNCN*RYKNKNSCCF 393
Y+++DF +C+ + +NKNS C+
Sbjct: 108 YVAKDFADCSEKLENKNSTCY 128
>Z73098-8|CAA97334.2| 303|Caenorhabditis elegans Hypothetical
protein T21C9.7 protein.
Length = 303
Score = 29.5 bits (63), Expect = 2.1
Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Frame = -2
Query: 161 MPFIKQFLVCSGVWTI-YFTLGMATGAPTVFIPQL*KRGKLYRSSL 27
MPF+ L + WTI YF+ + T T P L R + SS+
Sbjct: 257 MPFVSDILTFNHPWTIMYFSTKVRTSMATDHFPSLRSRAVMVTSSV 302
>U80027-20|AAC48113.2| 400|Caenorhabditis elegans Hypothetical
protein T28A11.2a protein.
Length = 400
Score = 29.1 bits (62), Expect = 2.8
Identities = 16/56 (28%), Positives = 32/56 (57%)
Frame = -2
Query: 560 IRKIQRQLNRPARRQRTVNH*A*CK*VHTDHWNYEYMSRDFTNCN*RYKNKNSCCF 393
+R +Q PAR+Q+ K + T + ++S++FT+C+ + ++KNS C+
Sbjct: 276 LRTLQCGPEHPARKQKL-------KLIRTYCESIVFISKNFTDCDAKLESKNSTCY 324
>Z70038-1|CAA93884.1| 2219|Caenorhabditis elegans Hypothetical protein
ZK1067.2 protein.
Length = 2219
Score = 28.7 bits (61), Expect = 3.7
Identities = 17/43 (39%), Positives = 25/43 (58%), Gaps = 4/43 (9%)
Frame = +3
Query: 495 CLM-INRTLAPCGPVELPLNF---TDKLCDKYCTTDLKHCVNT 611
CL + +TL+PC EL L + KLC + CT+ L+ C +T
Sbjct: 1728 CLTKVPKTLSPCKHTELVLCKQAPSTKLCTRRCTSYLEKCGHT 1770
>U50313-2|AAY86230.1| 883|Caenorhabditis elegans Inositol
1,4,5-trisphosphate receptorinteracting protein protein
1, isoform b protein.
Length = 883
Score = 28.7 bits (61), Expect = 3.7
Identities = 14/39 (35%), Positives = 23/39 (58%)
Frame = -1
Query: 129 WSMDDLFYLGNGHRSTHGIHTSALEKRQTLQKQSXEEME 13
+S+D +YLG TH I+ S + KR+ L + + E +E
Sbjct: 679 FSIDAAYYLGEYGILTHSINESDISKRKMLLRAASELVE 717
>U50313-1|AAY86229.1| 923|Caenorhabditis elegans Inositol
1,4,5-trisphosphate receptorinteracting protein protein
1, isoform a protein.
Length = 923
Score = 28.7 bits (61), Expect = 3.7
Identities = 14/39 (35%), Positives = 23/39 (58%)
Frame = -1
Query: 129 WSMDDLFYLGNGHRSTHGIHTSALEKRQTLQKQSXEEME 13
+S+D +YLG TH I+ S + KR+ L + + E +E
Sbjct: 679 FSIDAAYYLGEYGILTHSINESDISKRKMLLRAASELVE 717
>AF125463-1|AAD12861.2| 263|Caenorhabditis elegans Hypothetical
protein Y49F6C.6 protein.
Length = 263
Score = 27.9 bits (59), Expect = 6.5
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = +3
Query: 96 HSQGKINRPYSTTNEELLDKRHPRTLF 176
+S + RPY TTN +L+ + P+T F
Sbjct: 89 YSTTTVPRPYPTTNPKLISLQQPKTPF 115
>U80029-19|AAB37598.1| 139|Caenorhabditis elegans Hypothetical
protein T20D4.19 protein.
Length = 139
Score = 27.5 bits (58), Expect = 8.6
Identities = 9/21 (42%), Positives = 15/21 (71%)
Frame = -2
Query: 455 YMSRDFTNCN*RYKNKNSCCF 393
Y S+DF C+ + +N+NS C+
Sbjct: 110 YDSKDFAECSEKLENENSICY 130
>U28941-9|AAC71106.1| 452|Caenorhabditis elegans Hypothetical
protein F31D5.1 protein.
Length = 452
Score = 27.5 bits (58), Expect = 8.6
Identities = 18/57 (31%), Positives = 30/57 (52%)
Frame = +3
Query: 390 QKTARVFILISSIAIREIP*HVLVIPVISMHLFTLCLMINRTLAPCGPVELPLNFTD 560
Q +F+ I IR+ HVL++ + +H+ L LMI+ + P + PL+ TD
Sbjct: 276 QVIGSIFVAIIGNKIRKFGQHVLILGALILHVI-LFLMISLSF----PNDAPLHHTD 327
>AF003385-5|AAB54245.1| 494|Caenorhabditis elegans Hypothetical
protein R08F11.3 protein.
Length = 494
Score = 27.5 bits (58), Expect = 8.6
Identities = 16/32 (50%), Positives = 19/32 (59%)
Frame = +3
Query: 453 VLVIPVISMHLFTLCLMINRTLAPCGPVELPL 548
VLV+ IS++LF L R L P GP LPL
Sbjct: 6 VLVLTGISIYLFHLLYWKRRNLPP-GPTPLPL 36
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,039,472
Number of Sequences: 27780
Number of extensions: 272556
Number of successful extensions: 712
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 689
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 712
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1427403330
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -