Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_pT_D24
         (780 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces p...    45   1e-05
SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces pomb...    26   5.3  
SPBC32F12.07c |||ubiquitin-protein ligase E3 |Schizosaccharomyce...    26   5.3  
SPAC9E9.10c |cbh1|cbh|centromere binding protein |Schizosaccharo...    25   9.2  

>SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 517

 Score = 45.2 bits (102), Expect = 1e-05
 Identities = 28/97 (28%), Positives = 45/97 (46%), Gaps = 1/97 (1%)
 Frame = -2

Query: 767 PXEVLCLLNMVTPXXXXXXXXXXXXXXXXXXECNKYGVVRSIEIPRPIEGVEVP-GCGKV 591
           P  VL L N++T                   + + YG +  I+IPR I       G GKV
Sbjct: 416 PTRVLQLHNLITGDEIMDVQEYEDIYESVKTQFSNYGPLIDIKIPRSIGTRNSGLGTGKV 475

Query: 590 FVEFNSIADCQKAQQTLTGRKFSNRVVVTSYFDPDKY 480
           FV ++ I   + A + + G KF++R +V +++  D Y
Sbjct: 476 FVRYSDIRSAEVAMEEMKGCKFNDRTIVIAFYGEDCY 512


>SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1207

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 15/49 (30%), Positives = 25/49 (51%)
 Frame = -2

Query: 650 RSIEIPRPIEGVEVPGCGKVFVEFNSIADCQKAQQTLTGRKFSNRVVVT 504
           RS  +P   + ++ PG   +FV  N  A   ++ QT+  +  SN+V  T
Sbjct: 406 RSNSLPLK-DNIKGPGDDAIFVARNRFAVFSRSDQTIEIKDLSNKVTKT 453


>SPBC32F12.07c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 340

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = +3

Query: 636 NFYTTHNTIFVAFLLYIFKDIFILLFI 716
           NF     +I  AF   +FKDIF+  FI
Sbjct: 292 NFTKLEKSIIGAFAALVFKDIFVYGFI 318


>SPAC9E9.10c |cbh1|cbh|centromere binding protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 514

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = +3

Query: 627 WSWNFYTTHNTIFVAFL 677
           WSWNF  +  TI  +FL
Sbjct: 369 WSWNFGVSEKTIQASFL 385


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,790,541
Number of Sequences: 5004
Number of extensions: 51397
Number of successful extensions: 127
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 127
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 377352472
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)