Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_pT_D24
         (780 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0728 + 26717018-26717306,26717494-26717598,26717789-267178...    55   6e-08
11_06_0490 - 24293218-24293373,24293454-24293521,24293845-242939...    50   2e-06
01_05_0166 + 18844468-18845184,18847394-18847690                       43   2e-04
08_01_0118 + 947394-947885,948709-948810,948914-949219,949557-94...    29   4.1  
12_02_0872 + 23884715-23885770                                         28   7.2  

>11_06_0728 +
           26717018-26717306,26717494-26717598,26717789-26717870,
           26717979-26718055,26719087-26719151,26719261-26719302,
           26719385-26719444,26719583-26720203,26720315-26720450,
           26720667-26720734,26720811-26720948
          Length = 560

 Score = 55.2 bits (127), Expect = 6e-08
 Identities = 31/102 (30%), Positives = 48/102 (47%), Gaps = 1/102 (0%)
 Frame = -2

Query: 767 PXEVLCLLNMVTPXXXXXXXXXXXXXXXXXXECNKYGVVRSIEIPRPI-EGVEVPGCGKV 591
           P +V+CL  +V+                   E  KYG +  + IPRP   G+ V G GKV
Sbjct: 457 PTKVVCLTQVVSADELKDDEEYEDIMEDMRLEAGKYGNLIKVVIPRPDPSGLPVAGVGKV 516

Query: 590 FVEFNSIADCQKAQQTLTGRKFSNRVVVTSYFDPDKYHRREF 465
           F+E+  +    KA+  + GRKF    VV  ++  +K+   E+
Sbjct: 517 FLEYADVDGATKAKTAMHGRKFGGNPVVAVFYPENKFSSAEY 558


>11_06_0490 -
           24293218-24293373,24293454-24293521,24293845-24293986,
           24294079-24294699,24294791-24294871,24295002-24295072,
           24296106-24296176,24296568-24296675,24296786-24297024,
           24297493-24297657
          Length = 573

 Score = 50.4 bits (115), Expect = 2e-06
 Identities = 33/112 (29%), Positives = 51/112 (45%), Gaps = 7/112 (6%)
 Frame = -2

Query: 779 GAGPPXEVLCLLNMVTPXXXXXXXXXXXXXXXXXXECNKYGVVRSIEIPRPI-EGVEVPG 603
           G   P +V+CL  +V+P                  E  +YG +  + IPRP   G  V G
Sbjct: 460 GGALPTKVVCLTQVVSPDELRDDEEYEDIVQDMREEGCRYGNLVKVVIPRPDPSGAPVAG 519

Query: 602 CGK------VFVEFNSIADCQKAQQTLTGRKFSNRVVVTSYFDPDKYHRREF 465
            G+      VF+EF  +    KA+  + GRKF+N  VV  ++  DK+   ++
Sbjct: 520 VGRHESALQVFLEFADVESSTKAKNGMHGRKFANNQVVAVFYPEDKFAEGQY 571


>01_05_0166 + 18844468-18845184,18847394-18847690
          Length = 337

 Score = 43.2 bits (97), Expect = 2e-04
 Identities = 31/104 (29%), Positives = 45/104 (43%), Gaps = 2/104 (1%)
 Frame = -2

Query: 773 GPPXEVLCLLNMVTPXXXXXXXXXXXXXXXXXXECNKYGVVRSIEIPRPIEGVEVPG--C 600
           GPP  VL L NMV P                   C+KYG V  + I   I   + P    
Sbjct: 228 GPPTRVLLLRNMVGPGEVDDELEEEVASE-----CSKYGTVLRVLIFE-ITQADFPAEEA 281

Query: 599 GKVFVEFNSIADCQKAQQTLTGRKFSNRVVVTSYFDPDKYHRRE 468
            ++F+ F    +  KA   L GR F  RVV  ++FD +++ + +
Sbjct: 282 VRIFILFERAEEATKAMIDLEGRFFGGRVVRATFFDEERFGKNQ 325


>08_01_0118 +
           947394-947885,948709-948810,948914-949219,949557-949616
          Length = 319

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 18/49 (36%), Positives = 22/49 (44%)
 Frame = -2

Query: 662 YGVVRSIEIPRPIEGVEVPGCGKVFVEFNSIADCQKAQQTLTGRKFSNR 516
           YG V S+EI R  E     GCG  FV   S+ + + A   L G     R
Sbjct: 157 YGTVLSVEISRDPETGLSRGCG--FVTMRSLPEARTAMNALDGFDLDGR 203


>12_02_0872 + 23884715-23885770
          Length = 351

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 8/21 (38%), Positives = 16/21 (76%)
 Frame = +2

Query: 116 LCRLLNVLLACVMYRSCEKKK 178
           LC +L ++++C+ YRSC + +
Sbjct: 314 LCVVLEIIVSCMFYRSCRRSE 334


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,027,847
Number of Sequences: 37544
Number of extensions: 293590
Number of successful extensions: 639
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 626
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 638
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2091906552
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)