Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P17_pT_D24
(780 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U79157-1|AAC26982.1| 496|Caenorhabditis elegans splicing factor... 128 4e-30
AC024875-4|AAK29990.1| 143|Caenorhabditis elegans U2af splicing... 128 4e-30
AC024875-3|AAK29989.1| 496|Caenorhabditis elegans U2af splicing... 128 4e-30
AC024875-2|AAM44400.1| 471|Caenorhabditis elegans U2af splicing... 128 4e-30
AC024875-1|AAL00879.1| 474|Caenorhabditis elegans U2af splicing... 128 4e-30
AC090999-21|AAK26150.1| 530|Caenorhabditis elegans Hypothetical... 73 3e-13
Z73427-7|CAA97799.1| 371|Caenorhabditis elegans Hypothetical pr... 33 0.23
U97191-1|AAB52432.1| 805|Caenorhabditis elegans Nuclear pore co... 31 0.70
U55363-10|AAL11103.1| 364|Caenorhabditis elegans Hypothetical p... 30 2.1
AL590342-5|CAC35862.1| 507|Caenorhabditis elegans Hypothetical ... 30 2.1
AL032627-24|CAA21552.1| 507|Caenorhabditis elegans Hypothetical... 30 2.1
AL032622-8|CAA21503.1| 507|Caenorhabditis elegans Y66A7A.8 prot... 30 2.1
U23453-9|AAC46755.1| 727|Caenorhabditis elegans Hypothetical pr... 29 4.9
AL137227-1|CAB70238.2| 611|Caenorhabditis elegans Hypothetical ... 28 6.5
Z81583-6|CAB04674.1| 397|Caenorhabditis elegans Hypothetical pr... 28 8.6
U50312-6|AAL65771.1| 106|Caenorhabditis elegans Hypothetical pr... 28 8.6
>U79157-1|AAC26982.1| 496|Caenorhabditis elegans splicing factor
U2AF65 protein.
Length = 496
Score = 128 bits (309), Expect = 4e-30
Identities = 61/105 (58%), Positives = 71/105 (67%)
Frame = -2
Query: 779 GAGPPXEVLCLLNMVTPXXXXXXXXXXXXXXXXXXECNKYGVVRSIEIPRPIEGVEVPGC 600
GAG E+LCL+NMVT EC+KYG+VRS+EIPRP E VPG
Sbjct: 392 GAGRATEILCLMNMVTEDELKADDEYEEILEDVRDECSKYGIVRSLEIPRPYEDHPVPGV 451
Query: 599 GKVFVEFNSIADCQKAQQTLTGRKFSNRVVVTSYFDPDKYHRREF 465
GKVFVEF S +DCQ+AQ LTGRKF+NR VVTSY+D DKYH R+F
Sbjct: 452 GKVFVEFASTSDCQRAQAALTGRKFANRTVVTSYYDVDKYHNRQF 496
>AC024875-4|AAK29990.1| 143|Caenorhabditis elegans U2af splicing
factor protein 1,isoform b protein.
Length = 143
Score = 128 bits (309), Expect = 4e-30
Identities = 61/105 (58%), Positives = 71/105 (67%)
Frame = -2
Query: 779 GAGPPXEVLCLLNMVTPXXXXXXXXXXXXXXXXXXECNKYGVVRSIEIPRPIEGVEVPGC 600
GAG E+LCL+NMVT EC+KYG+VRS+EIPRP E VPG
Sbjct: 39 GAGRATEILCLMNMVTEDELKADDEYEEILEDVRDECSKYGIVRSLEIPRPYEDHPVPGV 98
Query: 599 GKVFVEFNSIADCQKAQQTLTGRKFSNRVVVTSYFDPDKYHRREF 465
GKVFVEF S +DCQ+AQ LTGRKF+NR VVTSY+D DKYH R+F
Sbjct: 99 GKVFVEFASTSDCQRAQAALTGRKFANRTVVTSYYDVDKYHNRQF 143
>AC024875-3|AAK29989.1| 496|Caenorhabditis elegans U2af splicing
factor protein 1,isoform a protein.
Length = 496
Score = 128 bits (309), Expect = 4e-30
Identities = 61/105 (58%), Positives = 71/105 (67%)
Frame = -2
Query: 779 GAGPPXEVLCLLNMVTPXXXXXXXXXXXXXXXXXXECNKYGVVRSIEIPRPIEGVEVPGC 600
GAG E+LCL+NMVT EC+KYG+VRS+EIPRP E VPG
Sbjct: 392 GAGRATEILCLMNMVTEDELKADDEYEEILEDVRDECSKYGIVRSLEIPRPYEDHPVPGV 451
Query: 599 GKVFVEFNSIADCQKAQQTLTGRKFSNRVVVTSYFDPDKYHRREF 465
GKVFVEF S +DCQ+AQ LTGRKF+NR VVTSY+D DKYH R+F
Sbjct: 452 GKVFVEFASTSDCQRAQAALTGRKFANRTVVTSYYDVDKYHNRQF 496
>AC024875-2|AAM44400.1| 471|Caenorhabditis elegans U2af splicing
factor protein 1,isoform d protein.
Length = 471
Score = 128 bits (309), Expect = 4e-30
Identities = 61/105 (58%), Positives = 71/105 (67%)
Frame = -2
Query: 779 GAGPPXEVLCLLNMVTPXXXXXXXXXXXXXXXXXXECNKYGVVRSIEIPRPIEGVEVPGC 600
GAG E+LCL+NMVT EC+KYG+VRS+EIPRP E VPG
Sbjct: 367 GAGRATEILCLMNMVTEDELKADDEYEEILEDVRDECSKYGIVRSLEIPRPYEDHPVPGV 426
Query: 599 GKVFVEFNSIADCQKAQQTLTGRKFSNRVVVTSYFDPDKYHRREF 465
GKVFVEF S +DCQ+AQ LTGRKF+NR VVTSY+D DKYH R+F
Sbjct: 427 GKVFVEFASTSDCQRAQAALTGRKFANRTVVTSYYDVDKYHNRQF 471
>AC024875-1|AAL00879.1| 474|Caenorhabditis elegans U2af splicing
factor protein 1,isoform c protein.
Length = 474
Score = 128 bits (309), Expect = 4e-30
Identities = 61/105 (58%), Positives = 71/105 (67%)
Frame = -2
Query: 779 GAGPPXEVLCLLNMVTPXXXXXXXXXXXXXXXXXXECNKYGVVRSIEIPRPIEGVEVPGC 600
GAG E+LCL+NMVT EC+KYG+VRS+EIPRP E VPG
Sbjct: 370 GAGRATEILCLMNMVTEDELKADDEYEEILEDVRDECSKYGIVRSLEIPRPYEDHPVPGV 429
Query: 599 GKVFVEFNSIADCQKAQQTLTGRKFSNRVVVTSYFDPDKYHRREF 465
GKVFVEF S +DCQ+AQ LTGRKF+NR VVTSY+D DKYH R+F
Sbjct: 430 GKVFVEFASTSDCQRAQAALTGRKFANRTVVTSYYDVDKYHNRQF 474
>AC090999-21|AAK26150.1| 530|Caenorhabditis elegans Hypothetical
protein Y82E9BR.2 protein.
Length = 530
Score = 72.5 bits (170), Expect = 3e-13
Identities = 31/43 (72%), Positives = 36/43 (83%)
Frame = -2
Query: 593 VFVEFNSIADCQKAQQTLTGRKFSNRVVVTSYFDPDKYHRREF 465
VFVEF S +DCQ+AQ LTGRKF+NR VVTSY+D DKYH R+F
Sbjct: 488 VFVEFASTSDCQRAQAALTGRKFANRTVVTSYYDVDKYHNRQF 530
>Z73427-7|CAA97799.1| 371|Caenorhabditis elegans Hypothetical
protein F58B3.7 protein.
Length = 371
Score = 33.1 bits (72), Expect = 0.23
Identities = 17/44 (38%), Positives = 23/44 (52%)
Frame = -2
Query: 596 KVFVEFNSIADCQKAQQTLTGRKFSNRVVVTSYFDPDKYHRREF 465
+VFVEF + A KA + GR F R V + + Y+ REF
Sbjct: 328 RVFVEFTNNAQAIKAFVMMNGRFFGGRSVSAGFQNVSDYNNREF 371
>U97191-1|AAB52432.1| 805|Caenorhabditis elegans Nuclear pore
complex protein protein11 protein.
Length = 805
Score = 31.5 bits (68), Expect = 0.70
Identities = 11/25 (44%), Positives = 19/25 (76%)
Frame = +1
Query: 580 NSTNTLPHPGTSTPSIGLGISILRT 654
++T+TLP P +TP++GLG+ + T
Sbjct: 531 STTSTLPKPAEATPTLGLGLGLTST 555
>U55363-10|AAL11103.1| 364|Caenorhabditis elegans Hypothetical
protein ZC404.13 protein.
Length = 364
Score = 29.9 bits (64), Expect = 2.1
Identities = 16/60 (26%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Frame = +3
Query: 555 FLAICNTVELDKYLAASRYFDSF-NWSWNFYTTHNTIFVAFLLYIFKDIFILLFITQFIR 731
F ++ + ++ Y+ ++F F N F TT + I + L F+ +F+ LF+ +FI+
Sbjct: 283 FFSVVGGLSINDYINYFQFFSVFTNLLAYFNTTTSFIIYSTLSSKFRKLFVQLFVPRFIK 342
>AL590342-5|CAC35862.1| 507|Caenorhabditis elegans Hypothetical
protein Y66A7A.8 protein.
Length = 507
Score = 29.9 bits (64), Expect = 2.1
Identities = 15/37 (40%), Positives = 22/37 (59%)
Frame = +1
Query: 514 TLLLNLRPVSVCCAFWQSAILLNSTNTLPHPGTSTPS 624
+LL +LRP +C + +A N L +PGTS+PS
Sbjct: 394 SLLESLRPSMICTSVSTTAPSTNFHAPLQYPGTSSPS 430
>AL032627-24|CAA21552.1| 507|Caenorhabditis elegans Hypothetical
protein Y66A7A.8 protein.
Length = 507
Score = 29.9 bits (64), Expect = 2.1
Identities = 15/37 (40%), Positives = 22/37 (59%)
Frame = +1
Query: 514 TLLLNLRPVSVCCAFWQSAILLNSTNTLPHPGTSTPS 624
+LL +LRP +C + +A N L +PGTS+PS
Sbjct: 394 SLLESLRPSMICTSVSTTAPSTNFHAPLQYPGTSSPS 430
>AL032622-8|CAA21503.1| 507|Caenorhabditis elegans Y66A7A.8
protein.
Length = 507
Score = 29.9 bits (64), Expect = 2.1
Identities = 15/37 (40%), Positives = 22/37 (59%)
Frame = +1
Query: 514 TLLLNLRPVSVCCAFWQSAILLNSTNTLPHPGTSTPS 624
+LL +LRP +C + +A N L +PGTS+PS
Sbjct: 394 SLLESLRPSMICTSVSTTAPSTNFHAPLQYPGTSSPS 430
>U23453-9|AAC46755.1| 727|Caenorhabditis elegans Hypothetical
protein B0252.1 protein.
Length = 727
Score = 28.7 bits (61), Expect = 4.9
Identities = 12/59 (20%), Positives = 36/59 (61%), Gaps = 1/59 (1%)
Frame = +2
Query: 74 KHAAPIHMHFXSFNLCRLLNVLLACVMYRSCEKKKTFIFNKT*HFQFIEL-VKLIISRN 247
K ++ +++ SFN+ +L+ V+ + + +C+ +T ++++ H Q I+ ++L++ +
Sbjct: 234 KPSSDVYVFMTSFNVSQLMRVVESTINGPTCQMSQTKMYSQFVHSQIIKTHIRLVMDED 292
>AL137227-1|CAB70238.2| 611|Caenorhabditis elegans Hypothetical
protein F58D5.1 protein.
Length = 611
Score = 28.3 bits (60), Expect = 6.5
Identities = 12/41 (29%), Positives = 20/41 (48%)
Frame = -2
Query: 590 FVEFNSIADCQKAQQTLTGRKFSNRVVVTSYFDPDKYHRRE 468
F+ FN DC KA + G++ VV S P + +++
Sbjct: 414 FIHFNERDDCLKAMEEWNGKELEGTVVEASLAKPPQEKKKK 454
>Z81583-6|CAB04674.1| 397|Caenorhabditis elegans Hypothetical
protein T02G6.6 protein.
Length = 397
Score = 27.9 bits (59), Expect = 8.6
Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 3/57 (5%)
Frame = +2
Query: 59 CLGAAKHAAPIHMHFXSFNLCRLLNVL---LACVMYRSCEKKKTFIFNKT*HFQFIE 220
C+G+ + I MH S L LL V L ++ + F++N T HF F+E
Sbjct: 166 CIGSVNEDSSIIMHKCSSILLELLRVEDYELRLECSKNFDLSHFFVWNFTTHFSFVE 222
>U50312-6|AAL65771.1| 106|Caenorhabditis elegans Hypothetical
protein B0222.10 protein.
Length = 106
Score = 27.9 bits (59), Expect = 8.6
Identities = 12/36 (33%), Positives = 22/36 (61%)
Frame = +3
Query: 663 FVAFLLYIFKDIFILLFITQFIRCYHVKKAQYFXRW 770
FV FLL IF IF++ ++T F+ + + ++ R+
Sbjct: 60 FVTFLLVIFLYIFLIYYVTFFVFPFGPLRVSHWMRF 95
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,787,094
Number of Sequences: 27780
Number of extensions: 299741
Number of successful extensions: 753
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 719
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 748
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1882685842
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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