Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P17_pT_D23
(607 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0411 + 29151647-29151790,29152974-29153039,29153398-291535... 136 1e-32
05_06_0265 - 26759960-26760088,26760315-26760386,26760457-267605... 135 3e-32
04_04_1432 - 33558895-33559023,33559215-33559286,33559405-335594... 118 3e-27
04_04_1431 - 33551127-33551300,33551362-33551433,33551508-335515... 107 7e-24
01_06_0363 - 28745581-28745709,28746043-28746114,28746373-287464... 58 4e-09
07_03_1039 - 23454130-23454552,23454859-23455536 35 0.043
09_04_0692 + 19502878-19502920,19505011-19505104,19505196-195052... 30 1.6
08_02_0370 - 16333471-16333526,16333821-16333912,16334553-163346... 29 3.8
07_03_1258 + 25244863-25245282,25246419-25246568,25246665-252468... 28 6.6
01_02_0098 - 11087875-11089110,11091744-11092022 27 8.7
>01_06_0411 +
29151647-29151790,29152974-29153039,29153398-29153538,
29153638-29153724,29153968-29154084,29154177-29154265,
29154510-29154561,29154667-29154762,29154835-29154879,
29155002-29155091,29155164-29155235,29155490-29155618
Length = 375
Score = 136 bits (330), Expect = 1e-32
Identities = 71/201 (35%), Positives = 117/201 (58%), Gaps = 2/201 (0%)
Frame = -2
Query: 606 NFRTNPNYMXMFELFNETLWRTSMGQHLDHVTGNR-KTDYSSFTLDRXXXXXXXXXXXXX 430
+F+ Y+ + +LFNE ++T+ GQ LD +T + + D + + L
Sbjct: 169 HFKGKLYYVDLIDLFNEVEFKTASGQLLDLITTHEGEKDLTKYNLTVHRRIVQYKTAYYS 228
Query: 429 YNLPVSLGLLLA-ENVDEKIYKSAQDICLEIGTMFQIQDDFIDCFGDEIKTGKVGTDIQE 253
+ LPV+ LLL+ EN+D + ++I +E+GT FQ+QDD++DC+GD GK+GTDI++
Sbjct: 229 FYLPVACALLLSGENLDN--FGDVKNILVEMGTYFQVQDDYLDCYGDPEFIGKIGTDIED 286
Query: 252 RKCTWLAVQALQRCTEAQRTVFKACYGSSEPAHVERIKRLYEDLHLPQIYKHQEKAMYDN 73
KC+WL VQAL+R E Q+ + YG +P V ++K LY++L+L ++ E+ Y+
Sbjct: 287 YKCSWLVVQALERADENQKHILFENYGKPDPECVAKVKDLYKELNLEAVFHEYERESYNK 346
Query: 72 IIRQIENIPIEAARVXFKKLL 10
+I IE P +A + K L
Sbjct: 347 LIADIEAHPNKAVQNVLKSFL 367
>05_06_0265 -
26759960-26760088,26760315-26760386,26760457-26760546,
26760649-26760693,26760785-26760880,26760980-26761031,
26761209-26761297,26761388-26761504,26761680-26761737,
26761834-26761936,26762027-26762051,26762677-26762826
Length = 341
Score = 135 bits (326), Expect = 3e-32
Identities = 71/200 (35%), Positives = 112/200 (56%), Gaps = 1/200 (0%)
Frame = -2
Query: 606 NFRTNPNYMXMFELFNETLWRTSMGQHLDHVTGNR-KTDYSSFTLDRXXXXXXXXXXXXX 430
+FR Y + +LFNE ++T+ GQ LD +T + + D + + +
Sbjct: 135 HFRGKLYYADLLDLFNEVEFKTASGQLLDLITTHEGEKDLNKYNIGVHRRIVQYKTSYYS 194
Query: 429 YNLPVSLGLLLAENVDEKIYKSAQDICLEIGTMFQIQDDFIDCFGDEIKTGKVGTDIQER 250
+ LPV+ LLL+ D Y + +DI +++G FQ+QDD++DC+GD GK+GTDI++
Sbjct: 195 FYLPVACALLLSGE-DLTKYGAVEDILVKMGIYFQVQDDYLDCYGDPKFIGKIGTDIEDY 253
Query: 249 KCTWLAVQALQRCTEAQRTVFKACYGSSEPAHVERIKRLYEDLHLPQIYKHQEKAMYDNI 70
KC+WL VQAL+R E+Q++V YG +PA V ++K LY +L+L ++ E Y +
Sbjct: 254 KCSWLVVQALERADESQKSVLFENYGKKDPACVAKVKSLYRELNLEAVFLDYENESYKKL 313
Query: 69 IRQIENIPIEAARVXFKKLL 10
I IE P A + K L
Sbjct: 314 IADIEAQPSIAVQNVLKSFL 333
>04_04_1432 -
33558895-33559023,33559215-33559286,33559405-33559494,
33559574-33559618,33559693-33559788,33559905-33559956,
33560044-33560132,33560226-33560342,33560448-33560534,
33560646-33560761,33560854-33560878,33561816-33562121
Length = 407
Score = 118 bits (285), Expect = 3e-27
Identities = 65/200 (32%), Positives = 104/200 (52%), Gaps = 1/200 (0%)
Frame = -2
Query: 603 FRTNPNYMXMFELFNETLWRTSMGQHLDHVTGNRKT-DYSSFTLDRXXXXXXXXXXXXXY 427
F+ ++ + EL+NE +T+MGQ LD +T + D + + + +
Sbjct: 202 FKEKFYFLDLMELWNEIGLQTAMGQMLDLITTHTGAKDLARYRIQGYRRIVKYKTSYYSF 261
Query: 426 NLPVSLGLLLAENVDEKIYKSAQDICLEIGTMFQIQDDFIDCFGDEIKTGKVGTDIQERK 247
LPV+ LLL Y +++ +E+G FQIQDD++DCFGD GKVGTDI++ K
Sbjct: 262 YLPVACALLL-NGARLSDYVELKNVLIEMGVYFQIQDDYLDCFGDPEVIGKVGTDIEDYK 320
Query: 246 CTWLAVQALQRCTEAQRTVFKACYGSSEPAHVERIKRLYEDLHLPQIYKHQEKAMYDNII 67
C+WL VQA++ E + + YG S+P V +K +Y +L L I+ E +Y +++
Sbjct: 321 CSWLIVQAMELANENEMKILYENYGKSDPKCVAEVKSVYRELDLQDIFLEYESRVYKHLV 380
Query: 66 RQIENIPIEAARVXFKKLLE 7
I+ A R K L+
Sbjct: 381 STIDAETDRAIRDILKSFLK 400
>04_04_1431 -
33551127-33551300,33551362-33551433,33551508-33551597,
33551671-33551715,33551785-33551880,33552245-33552296,
33552412-33552500,33552590-33552887,33553007-33553109,
33553328-33553352,33553503-33553763
Length = 434
Score = 107 bits (257), Expect = 7e-24
Identities = 58/164 (35%), Positives = 88/164 (53%), Gaps = 1/164 (0%)
Frame = -2
Query: 603 FRTNPNYMXMFELFNETLWRTSMGQHLDHV-TGNRKTDYSSFTLDRXXXXXXXXXXXXXY 427
FR P ++ + E+++E +TS+GQ LD + T D + ++++ +
Sbjct: 214 FREKPYFLDILEIWSEIALQTSLGQMLDLISTHTGADDLAKYSIEGYRRIVKYKTAYYSF 273
Query: 426 NLPVSLGLLLAENVDEKIYKSAQDICLEIGTMFQIQDDFIDCFGDEIKTGKVGTDIQERK 247
LPV+ LLL+ E + +DI +E+G FQIQDD++DCF D GK+GTDI++ K
Sbjct: 274 YLPVANALLLSGAKLED-FSGLKDILIEMGIYFQIQDDYLDCFADPNTIGKIGTDIEDHK 332
Query: 246 CTWLAVQALQRCTEAQRTVFKACYGSSEPAHVERIKRLYEDLHL 115
C+WL VQAL Q V YG + + V +KR Y L L
Sbjct: 333 CSWLIVQALGHADNNQIEVLHRNYGKKDSSSVSEVKRTYAALDL 376
>01_06_0363 -
28745581-28745709,28746043-28746114,28746373-28746417,
28746523-28746618,28747029-28747080,28747232-28747305,
28747386-28747502,28747844-28747930,28748186-28748281,
28748508-28748654
Length = 304
Score = 58.4 bits (135), Expect = 4e-09
Identities = 38/111 (34%), Positives = 56/111 (50%), Gaps = 1/111 (0%)
Frame = -2
Query: 603 FRTNPNYMXMFELFNETLWRTSMGQHLDHVTGNRKTDYSSFTLDRXXXXXXXXXXXXXYN 424
FR Y+ + +LFNE +T+ GQ LD +T N L++ +
Sbjct: 134 FRGKSYYVDLLDLFNEVEIQTTSGQLLDQITTNEGRK----DLNKYRRIVEYKTAYYSFY 189
Query: 423 LPVSLGLLLA-ENVDEKIYKSAQDICLEIGTMFQIQDDFIDCFGDEIKTGK 274
LPV+ LLL E++D Y + I +E+G FQ QDD++DCFG+ GK
Sbjct: 190 LPVACALLLFDESLDN--YAQVKHILVEMGVYFQSQDDYLDCFGEPEIIGK 238
Score = 53.6 bits (123), Expect = 1e-07
Identities = 25/68 (36%), Positives = 36/68 (52%)
Frame = -2
Query: 213 CTEAQRTVFKACYGSSEPAHVERIKRLYEDLHLPQIYKHQEKAMYDNIIRQIENIPIEAA 34
C + K YG S+PA V ++K LY +LHL +++ E+ Y+ +I IE P EA
Sbjct: 229 CFGEPEIIGKENYGKSDPACVAKVKDLYNELHLQRVFSEYERESYEKLISAIEAQPNEAV 288
Query: 33 RVXFKKLL 10
R K L
Sbjct: 289 RAVLKSFL 296
>07_03_1039 - 23454130-23454552,23454859-23455536
Length = 366
Score = 35.1 bits (77), Expect = 0.043
Identities = 22/72 (30%), Positives = 36/72 (50%), Gaps = 1/72 (1%)
Frame = -2
Query: 417 VSLGLLLAENVDEKIYKSAQDICLEIGTMFQIQDDFIDCFGDEIKTGK-VGTDIQERKCT 241
V +G +L DE+I +S + IG +FQ+ DD +D + GK G D+ K T
Sbjct: 260 VVIGAILGGGSDEQI-ESLRMYARSIGLLFQVVDDILDVTKSSEELGKTAGKDLASDKTT 318
Query: 240 WLAVQALQRCTE 205
+ + L++ E
Sbjct: 319 YPKLLGLEKSRE 330
>09_04_0692 +
19502878-19502920,19505011-19505104,19505196-19505227,
19505833-19506074,19506758-19506994,19508283-19508396
Length = 253
Score = 29.9 bits (64), Expect = 1.6
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = +1
Query: 19 FKXHAGGLYWYIFNLSYNIVVH 84
F+ GG+YWY F YN+V+H
Sbjct: 231 FRDFTGGMYWYAF--IYNVVLH 250
>08_02_0370 -
16333471-16333526,16333821-16333912,16334553-16334671,
16335152-16335226,16335328-16335393,16335507-16335563,
16335640-16335689,16335774-16335944,16337057-16337183,
16337658-16338017
Length = 390
Score = 28.7 bits (61), Expect = 3.8
Identities = 16/70 (22%), Positives = 35/70 (50%)
Frame = -2
Query: 411 LGLLLAENVDEKIYKSAQDICLEIGTMFQIQDDFIDCFGDEIKTGKVGTDIQERKCTWLA 232
L +++ E + + +++ + T++Q+ + ID G E+K ++ IQE C L
Sbjct: 215 LPIIVLEMPSVLLMAAIRNVHIARPTIYQVVKEMIDKMGYEVKLVRINKRIQEAYCAELF 274
Query: 231 VQALQRCTEA 202
+ + TE+
Sbjct: 275 LTKVGDHTES 284
>07_03_1258 +
25244863-25245282,25246419-25246568,25246665-25246877,
25246979-25247068,25247311-25247424,25247881-25248150,
25248251-25248407,25248691-25248741,25248742-25248819,
25249357-25249457,25249832-25250002,25250136-25250210,
25251527-25251793
Length = 718
Score = 27.9 bits (59), Expect = 6.6
Identities = 11/19 (57%), Positives = 15/19 (78%)
Frame = +1
Query: 241 STFALLYICTNFTSFYFIT 297
STF L+Y+ +F SF+FIT
Sbjct: 467 STFGLVYLIYSFCSFHFIT 485
>01_02_0098 - 11087875-11089110,11091744-11092022
Length = 504
Score = 27.5 bits (58), Expect = 8.7
Identities = 17/62 (27%), Positives = 35/62 (56%)
Frame = -2
Query: 222 LQRCTEAQRTVFKACYGSSEPAHVERIKRLYEDLHLPQIYKHQEKAMYDNIIRQIENIPI 43
++R E+ ++ FK C S ++ +K+L + L QI++ E + +++ +I NI I
Sbjct: 298 VKRIWESLKSAFKKCTNRSYLVMLKALKKLDDFDTLQQIFQEWESS-HEHYDMKIPNIII 356
Query: 42 EA 37
+A
Sbjct: 357 QA 358
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,451,385
Number of Sequences: 37544
Number of extensions: 294352
Number of successful extensions: 608
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 596
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 605
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1442939384
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -