Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_pT_D22
         (554 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ005422-1|CAA06528.1|  287|Tribolium castaneum caudal protein p...    24   0.77 
AJ005421-1|CAA06527.1|  249|Tribolium castaneum caudal protein p...    24   0.77 
AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc fin...    23   1.4  
AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription fa...    23   2.4  

>AJ005422-1|CAA06528.1|  287|Tribolium castaneum caudal protein
           protein.
          Length = 287

 Score = 24.2 bits (50), Expect = 0.77
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = +2

Query: 284 VDRQPPLRSPFSWTWK 331
           V R PP RSP+ W  K
Sbjct: 114 VARPPPARSPYEWIKK 129


>AJ005421-1|CAA06527.1|  249|Tribolium castaneum caudal protein
           protein.
          Length = 249

 Score = 24.2 bits (50), Expect = 0.77
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = +2

Query: 284 VDRQPPLRSPFSWTWK 331
           V R PP RSP+ W  K
Sbjct: 114 VARPPPARSPYEWIKK 129


>AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc finger
           protein protein.
          Length = 456

 Score = 23.4 bits (48), Expect = 1.4
 Identities = 9/19 (47%), Positives = 10/19 (52%)
 Frame = -2

Query: 544 GSQRENKNAASTHIPGCDR 488
           G     KN  S HIPGC +
Sbjct: 306 GVHLRKKNIHSCHIPGCGK 324


>AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription
           factor protein.
          Length = 441

 Score = 22.6 bits (46), Expect = 2.4
 Identities = 9/24 (37%), Positives = 10/24 (41%)
 Frame = +2

Query: 101 SWSTTALPMMPCGPDSEIWSSTKS 172
           +WST   P     P    WS T S
Sbjct: 306 TWSTVQTPTTVMSPTINCWSLTSS 329


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 119,004
Number of Sequences: 336
Number of extensions: 2582
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 13725787
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)