Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P17_pT_D22
(554 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1599 - 28022196-28022218,28022355-28022408,28022545-280226... 146 8e-36
03_02_1006 + 13150394-13150450,13150787-13150899,13152538-131527... 146 1e-35
08_02_1596 + 28125331-28125556,28125986-28126047,28126160-281261... 137 5e-33
03_02_0185 - 6239421-6239480,6239971-6240024,6240523-6240578,624... 132 2e-31
04_04_0863 + 28847761-28848009,28848108-28848131,28849388-288494... 52 3e-07
03_06_0167 - 32115770-32115886,32116388-32117102,32117178-321173... 35 0.050
03_06_0343 + 33274329-33274981,33275197-33276121 31 0.82
12_02_1170 - 26663491-26663602,26663999-26664104,26664613-266648... 30 1.1
05_06_0061 + 25274693-25274794,25274982-25275069,25275186-252752... 29 1.9
03_02_0561 + 9466428-9466502,9466503-9467243,9467592-9467600 29 3.3
11_04_0091 - 13392864-13392950,13393534-13393579,13393706-133938... 28 4.4
11_03_0045 + 9253101-9253135,9253802-9253917,9255642-9256084 28 5.8
09_04_0188 - 15410310-15410514,15410597-15410748,15410845-154110... 28 5.8
03_01_0515 - 3864796-3865425 28 5.8
04_03_0150 + 11877714-11878487,11880928-11881245 27 7.6
02_04_0115 - 19888252-19888406,19888507-19888573,19888867-198891... 27 7.6
>07_03_1599 -
28022196-28022218,28022355-28022408,28022545-28022620,
28022727-28022758,28022921-28023016,28023105-28023206,
28023291-28023366
Length = 152
Score = 146 bits (355), Expect = 8e-36
Identities = 66/128 (51%), Positives = 86/128 (67%), Gaps = 1/128 (0%)
Frame = -3
Query: 450 RAIAVL-STETIRGNITFTQVQDGKVHVQGGITGLPPGEYGFHVHEKGDLSGGCLSTGSH 274
+A+AVL S+E ++G I F+Q DG V G ++GL PG +GFHVH GD + GC+STG H
Sbjct: 3 KAVAVLASSEGVKGTIFFSQEGDGPTSVTGSVSGLKPGLHGFHVHALGDTTNGCMSTGPH 62
Query: 273 FNPEHKDHGHPNDVNRHVGDLGNVVFDENHYSRIDLVDDQISLSGPHGIIGRAVVLHEKA 94
FNP K+HG P D NRH GDLGN+ + + +++ D QI L+G H IIGRAVV+H
Sbjct: 63 FNPTGKEHGAPQDENRHAGDLGNITAGADGVANVNVSDSQIPLTGAHSIIGRAVVVHADP 122
Query: 93 DDYGKSDH 70
DD GK H
Sbjct: 123 DDLGKGGH 130
>03_02_1006 +
13150394-13150450,13150787-13150899,13152538-13152709,
13153791-13153878,13153971-13154072,13154197-13154292,
13154547-13154578,13154727-13154802,13155264-13155317,
13155431-13155453
Length = 270
Score = 146 bits (354), Expect = 1e-35
Identities = 67/131 (51%), Positives = 86/131 (65%), Gaps = 1/131 (0%)
Frame = -3
Query: 459 TPSRAIAVL-STETIRGNITFTQVQDGKVHVQGGITGLPPGEYGFHVHEKGDLSGGCLST 283
T +A+ VL S+E ++G I F Q DG V G ++GL PG +GFH+H GD + GC+ST
Sbjct: 118 TMVKAVVVLGSSEIVKGTIHFVQEGDGPTTVTGSVSGLKPGLHGFHIHALGDTTNGCMST 177
Query: 282 GSHFNPEHKDHGHPNDVNRHVGDLGNVVFDENHYSRIDLVDDQISLSGPHGIIGRAVVLH 103
G H+NP K+HG P D RH GDLGNV E+ + I +VD QI L+GP+ IIGRAVV+H
Sbjct: 178 GPHYNPAGKEHGAPEDETRHAGDLGNVTAGEDGVANIHVVDSQIPLTGPNSIIGRAVVVH 237
Query: 102 EKADDYGKSDH 70
DD GK H
Sbjct: 238 ADPDDLGKGGH 248
>08_02_1596 +
28125331-28125556,28125986-28126047,28126160-28126199,
28126934-28127029,28127138-28127169,28127274-28127349,
28127430-28127483,28127916-28127941
Length = 203
Score = 137 bits (332), Expect = 5e-33
Identities = 63/128 (49%), Positives = 81/128 (63%), Gaps = 1/128 (0%)
Frame = -3
Query: 450 RAIAVLS-TETIRGNITFTQVQDGKVHVQGGITGLPPGEYGFHVHEKGDLSGGCLSTGSH 274
+A+AVL T + G +T TQ G V +TGL PG +GFH+HE GD + GC+STG H
Sbjct: 53 KAVAVLKGTSQVEGVVTLTQDDQGPTTVNVRVTGLTPGLHGFHLHEFGDTTNGCISTGPH 112
Query: 273 FNPEHKDHGHPNDVNRHVGDLGNVVFDENHYSRIDLVDDQISLSGPHGIIGRAVVLHEKA 94
FNP + HG P D RH GDLGN+V + + +VD QI LSGP+ ++GRA V+HE
Sbjct: 113 FNPNNLTHGAPEDEVRHAGDLGNIVANAEGVAEATIVDKQIPLSGPNSVVGRAFVVHELE 172
Query: 93 DDYGKSDH 70
DD GK H
Sbjct: 173 DDLGKGGH 180
>03_02_0185 -
6239421-6239480,6239971-6240024,6240523-6240578,
6241108-6241183,6241276-6241307,6241421-6241516,
6242498-6242599,6242728-6242833
Length = 193
Score = 132 bits (318), Expect = 2e-31
Identities = 59/115 (51%), Positives = 77/115 (66%)
Frame = -3
Query: 402 FTQVQDGKVHVQGGITGLPPGEYGFHVHEKGDLSGGCLSTGSHFNPEHKDHGHPNDVNRH 223
F G V+G +TGL PG +GFH+H GD + GC STG HFNP +K HG P+D RH
Sbjct: 30 FQDPSTGYTEVRGRVTGLAPGLHGFHIHSFGDTTNGCNSTGPHFNPHNKSHGAPSDDERH 89
Query: 222 VGDLGNVVFDENHYSRIDLVDDQISLSGPHGIIGRAVVLHEKADDYGKSDHPDYQ 58
VGDLGN+V +++ + I + D QISLSGPH I+GRAVV+H +DD G+ + Q
Sbjct: 90 VGDLGNIVANKDGVADIFIKDLQISLSGPHSILGRAVVVHADSDDLGRGQKSNCQ 144
>04_04_0863 +
28847761-28848009,28848108-28848131,28849388-28849460,
28849550-28849684,28850191-28850411,28851747-28851983
Length = 312
Score = 52.0 bits (119), Expect = 3e-07
Identities = 35/121 (28%), Positives = 60/121 (49%)
Frame = -3
Query: 453 SRAIAVLSTETIRGNITFTQVQDGKVHVQGGITGLPPGEYGFHVHEKGDLSGGCLSTGSH 274
S A+A I G + QV V+ +GL PG++G+ ++E GDL+ G STG
Sbjct: 165 SAAVAEFKGPVIFGVVRLAQVNMELAIVEATFSGLSPGKHGWSINEFGDLTRGAESTGKV 224
Query: 273 FNPEHKDHGHPNDVNRHVGDLGNVVFDENHYSRIDLVDDQISLSGPHGIIGRAVVLHEKA 94
+NP D+ N+ +GDLG + E ++ +++ + +IGR++ L+
Sbjct: 225 YNP--SDYRS----NKPLGDLGTLEAGEKGEAQFSASKEKLKVV---DLIGRSIALYATE 275
Query: 93 D 91
D
Sbjct: 276 D 276
>03_06_0167 -
32115770-32115886,32116388-32117102,32117178-32117383,
32118094-32118138,32119047-32119109,32119726-32119749,
32120673-32120772,32120814-32120907,32121036-32121074,
32121605-32121668
Length = 488
Score = 34.7 bits (76), Expect = 0.050
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = -3
Query: 378 VHVQGGITGLPPGEYGFHVHEKGDLSGGCLSTG 280
+ V+ ++GL P +GFHVH G + GC+ G
Sbjct: 37 ITVKENVSGLKPVLHGFHVHALGGTTNGCMRNG 69
>03_06_0343 + 33274329-33274981,33275197-33276121
Length = 525
Score = 30.7 bits (66), Expect = 0.82
Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
Frame = -1
Query: 518 CFNSH--SWLRSLWRRLIMASPRRPALLPFYPQKRLEATSHLLRFKMGR 378
C SH S++ SLW ++ P+ L P+K+ E L FK G+
Sbjct: 226 CVRSHFRSYMCSLWTEVVFKHPKTFETLAMDPEKKREIIDDLDMFKNGK 274
>12_02_1170 -
26663491-26663602,26663999-26664104,26664613-26664816,
26664914-26665076,26665196-26665317,26665702-26665969
Length = 324
Score = 30.3 bits (65), Expect = 1.1
Identities = 13/35 (37%), Positives = 17/35 (48%)
Frame = -2
Query: 541 SQRENKNAASTHIPGCDRSGDGSSWLHHAVPRYCR 437
S+ KN A+ + G D G SWL +PR R
Sbjct: 249 SRHSVKNGAADQLTGVDEEGHRLSWLTETIPRMLR 283
>05_06_0061 +
25274693-25274794,25274982-25275069,25275186-25275295,
25275542-25275605,25275713-25275777,25275864-25275929,
25276084-25276199,25276382-25276415
Length = 214
Score = 29.5 bits (63), Expect = 1.9
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = +1
Query: 454 RRGEAMMSRRQSDRSQECELKQHFC 528
RRGE M+R+++ RS C LK C
Sbjct: 184 RRGETTMARKKTRRSTGCSLKNLMC 208
>03_02_0561 + 9466428-9466502,9466503-9467243,9467592-9467600
Length = 274
Score = 28.7 bits (61), Expect = 3.3
Identities = 18/43 (41%), Positives = 20/43 (46%), Gaps = 5/43 (11%)
Frame = -2
Query: 223 RRRPWKRGL*R-----EPLQQDRLGRRPDLAIGSARHHRQSGG 110
RRRPW RG R P + GRRP G H +SGG
Sbjct: 47 RRRPWSRGGGRAAPESTPPAKYARGRRPRRGSGGHAPHPESGG 89
>11_04_0091 -
13392864-13392950,13393534-13393579,13393706-13393819,
13394135-13394256,13394360-13394431,13395663-13395812,
13399258-13399341,13399459-13399560,13399634-13399671,
13399762-13399864,13399978-13400389,13400493-13400671
Length = 502
Score = 28.3 bits (60), Expect = 4.4
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +3
Query: 72 GHSCRNHQLSHGAPPLCR*CRADPI 146
G + +H+ GAPPL R C A P+
Sbjct: 109 GENLNHHRSPAGAPPLTRLCAAGPV 133
>11_03_0045 + 9253101-9253135,9253802-9253917,9255642-9256084
Length = 197
Score = 27.9 bits (59), Expect = 5.8
Identities = 16/34 (47%), Positives = 18/34 (52%)
Frame = -2
Query: 253 PRSSERCQPSRRRPWKRGL*REPLQQDRLGRRPD 152
PR S R + RRPW RG R L+ G RPD
Sbjct: 90 PRISGRQRGGGRRPWDRGRRRRRLEH---GGRPD 120
>09_04_0188 -
15410310-15410514,15410597-15410748,15410845-15411003,
15411062-15411367,15412508-15412535,15413174-15413290,
15413649-15413717,15413919-15414103
Length = 406
Score = 27.9 bits (59), Expect = 5.8
Identities = 15/38 (39%), Positives = 19/38 (50%)
Frame = +3
Query: 282 QSIDNRRSGRPSHGRGNRIHPEAAQ*CLPEREPSHLEP 395
+ I + R R SHG G P+AAQ L +R P P
Sbjct: 147 EDIRHHRLRRRSHGHGVLQGPQAAQLLLSDRRPELSSP 184
>03_01_0515 - 3864796-3865425
Length = 209
Score = 27.9 bits (59), Expect = 5.8
Identities = 12/24 (50%), Positives = 13/24 (54%)
Frame = +2
Query: 296 PPLRSPFSWTWKPYSPGGSPVMPP 367
PPL P S T P P P+MPP
Sbjct: 49 PPLAPPPSVTSSPPPPAAGPLMPP 72
>04_03_0150 + 11877714-11878487,11880928-11881245
Length = 363
Score = 27.5 bits (58), Expect = 7.6
Identities = 10/13 (76%), Positives = 10/13 (76%)
Frame = +3
Query: 291 DNRRSGRPSHGRG 329
DNR GRP HGRG
Sbjct: 279 DNRGEGRPGHGRG 291
>02_04_0115 -
19888252-19888406,19888507-19888573,19888867-19889101,
19889179-19889255,19889350-19889415,19889517-19889565,
19889651-19889701,19889799-19889851,19889973-19890024,
19890126-19890214,19890308-19890393,19890603-19890659,
19890742-19890919,19891852-19891908,19892209-19892439
Length = 500
Score = 27.5 bits (58), Expect = 7.6
Identities = 18/66 (27%), Positives = 26/66 (39%)
Frame = -3
Query: 309 DLSGGCLSTGSHFNPEHKDHGHPNDVNRHVGDLGNVVFDENHYSRIDLVDDQISLSGPHG 130
DL GG +G P+H+ N N VG N V +N+ + S S G
Sbjct: 357 DLGGGATPSGHANVPKHQPTEVFNTTNAGVGQCSNSVAVDNNIQHSQTIPQDPSASHDFG 416
Query: 129 IIGRAV 112
+ R +
Sbjct: 417 GMTRII 422
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,092,698
Number of Sequences: 37544
Number of extensions: 344882
Number of successful extensions: 1062
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1030
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1060
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1257681096
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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