Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P17_pT_D22
(554 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X77020-1|CAA54318.1| 158|Caenorhabditis elegans copper/zinc sup... 124 4e-29
L20135-1|AAA28147.1| 158|Caenorhabditis elegans superoxide dism... 124 4e-29
AC006608-8|AAV34795.1| 158|Caenorhabditis elegans Sod (superoxi... 124 4e-29
AC006608-7|AAF39759.1| 180|Caenorhabditis elegans Sod (superoxi... 124 4e-29
Z27080-4|CAB61015.1| 176|Caenorhabditis elegans Hypothetical pr... 122 1e-28
AB190513-1|BAD51397.1| 221|Caenorhabditis elegans superoxide di... 122 1e-28
AB003924-1|BAA28262.1| 176|Caenorhabditis elegans SOD4-1 protein. 122 1e-28
U42833-3|AAA83577.1| 178|Caenorhabditis elegans Sod (superoxide... 111 3e-25
Z81110-6|CAB03260.2| 1011|Caenorhabditis elegans Hypothetical pr... 42 2e-04
Z81110-2|CAB03259.1| 802|Caenorhabditis elegans Hypothetical pr... 42 2e-04
U39853-1|AAK39227.2| 390|Caenorhabditis elegans Hypothetical pr... 27 6.9
L11247-9|AAK84522.2| 639|Caenorhabditis elegans Hypothetical pr... 27 6.9
U61947-10|AAB03132.1| 932|Caenorhabditis elegans Kinesin-like p... 27 9.1
AY211948-1|AAO34669.1| 932|Caenorhabditis elegans kinesin-like ... 27 9.1
AF229855-1|AAF71303.1| 1497|Caenorhabditis elegans dual oxidase ... 27 9.1
AF043697-1|AAK73882.1| 1497|Caenorhabditis elegans Blistered cut... 27 9.1
AF003139-11|AAK73871.1| 1503|Caenorhabditis elegans Hypothetical... 27 9.1
AB033538-1|BAB19356.2| 930|Caenorhabditis elegans kinesin like ... 27 9.1
>X77020-1|CAA54318.1| 158|Caenorhabditis elegans copper/zinc
superoxide dismutase protein.
Length = 158
Score = 124 bits (299), Expect = 4e-29
Identities = 58/126 (46%), Positives = 81/126 (64%), Gaps = 1/126 (0%)
Frame = -3
Query: 453 SRAIAVLSTETIRGNITFTQVQDG-KVHVQGGITGLPPGEYGFHVHEKGDLSGGCLSTGS 277
+RA+AVL ET+ G I TQ + + ++G I GL PG +GFHVH+ GD + GC+S G
Sbjct: 3 NRAVAVLRGETVTGTIWITQKSENDQAVIEGEIKGLTPGLHGFHVHQYGDSTNGCISAGP 62
Query: 276 HFNPEHKDHGHPNDVNRHVGDLGNVVFDENHYSRIDLVDDQISLSGPHGIIGRAVVLHEK 97
HFNP K HG P RHVGDLGNV + ++I L D ++L GP+ ++GR++V+H
Sbjct: 63 HFNPFGKTHGGPKSEIRHVGDLGNVEAGADGVAKIKLTDTLVTLYGPNTVVGRSMVVHAG 122
Query: 96 ADDYGK 79
DD G+
Sbjct: 123 QDDLGE 128
>L20135-1|AAA28147.1| 158|Caenorhabditis elegans superoxide
dismutase protein.
Length = 158
Score = 124 bits (299), Expect = 4e-29
Identities = 58/126 (46%), Positives = 81/126 (64%), Gaps = 1/126 (0%)
Frame = -3
Query: 453 SRAIAVLSTETIRGNITFTQVQDG-KVHVQGGITGLPPGEYGFHVHEKGDLSGGCLSTGS 277
+RA+AVL ET+ G I TQ + + ++G I GL PG +GFHVH+ GD + GC+S G
Sbjct: 3 NRAVAVLRGETVTGTIWITQKSENDQAVIEGEIKGLTPGLHGFHVHQYGDSTNGCISAGP 62
Query: 276 HFNPEHKDHGHPNDVNRHVGDLGNVVFDENHYSRIDLVDDQISLSGPHGIIGRAVVLHEK 97
HFNP K HG P RHVGDLGNV + ++I L D ++L GP+ ++GR++V+H
Sbjct: 63 HFNPFGKTHGGPKSEIRHVGDLGNVEAGADGVAKIKLTDTLVTLYGPNTVVGRSMVVHAG 122
Query: 96 ADDYGK 79
DD G+
Sbjct: 123 QDDLGE 128
>AC006608-8|AAV34795.1| 158|Caenorhabditis elegans Sod (superoxide
dismutase) protein1, isoform b protein.
Length = 158
Score = 124 bits (299), Expect = 4e-29
Identities = 58/126 (46%), Positives = 81/126 (64%), Gaps = 1/126 (0%)
Frame = -3
Query: 453 SRAIAVLSTETIRGNITFTQVQDG-KVHVQGGITGLPPGEYGFHVHEKGDLSGGCLSTGS 277
+RA+AVL ET+ G I TQ + + ++G I GL PG +GFHVH+ GD + GC+S G
Sbjct: 3 NRAVAVLRGETVTGTIWITQKSENDQAVIEGEIKGLTPGLHGFHVHQYGDSTNGCISAGP 62
Query: 276 HFNPEHKDHGHPNDVNRHVGDLGNVVFDENHYSRIDLVDDQISLSGPHGIIGRAVVLHEK 97
HFNP K HG P RHVGDLGNV + ++I L D ++L GP+ ++GR++V+H
Sbjct: 63 HFNPFGKTHGGPKSEIRHVGDLGNVEAGADGVAKIKLTDTLVTLYGPNTVVGRSMVVHAG 122
Query: 96 ADDYGK 79
DD G+
Sbjct: 123 QDDLGE 128
>AC006608-7|AAF39759.1| 180|Caenorhabditis elegans Sod (superoxide
dismutase) protein1, isoform a protein.
Length = 180
Score = 124 bits (299), Expect = 4e-29
Identities = 58/126 (46%), Positives = 81/126 (64%), Gaps = 1/126 (0%)
Frame = -3
Query: 453 SRAIAVLSTETIRGNITFTQVQDG-KVHVQGGITGLPPGEYGFHVHEKGDLSGGCLSTGS 277
+RA+AVL ET+ G I TQ + + ++G I GL PG +GFHVH+ GD + GC+S G
Sbjct: 25 NRAVAVLRGETVTGTIWITQKSENDQAVIEGEIKGLTPGLHGFHVHQYGDSTNGCISAGP 84
Query: 276 HFNPEHKDHGHPNDVNRHVGDLGNVVFDENHYSRIDLVDDQISLSGPHGIIGRAVVLHEK 97
HFNP K HG P RHVGDLGNV + ++I L D ++L GP+ ++GR++V+H
Sbjct: 85 HFNPFGKTHGGPKSEIRHVGDLGNVEAGADGVAKIKLTDTLVTLYGPNTVVGRSMVVHAG 144
Query: 96 ADDYGK 79
DD G+
Sbjct: 145 QDDLGE 150
>Z27080-4|CAB61015.1| 176|Caenorhabditis elegans Hypothetical
protein F55H2.1 protein.
Length = 176
Score = 122 bits (295), Expect = 1e-28
Identities = 57/119 (47%), Positives = 76/119 (63%)
Frame = -3
Query: 435 LSTETIRGNITFTQVQDGKVHVQGGITGLPPGEYGFHVHEKGDLSGGCLSTGSHFNPEHK 256
+ TE I G I F Q + + G ++GL G++GFH+HEKGD GCLS G H+NP
Sbjct: 36 IPTELI-GTIDFDQ-SGSFLKLNGSVSGLAAGKHGFHIHEKGDTGNGCLSAGGHYNPHKL 93
Query: 255 DHGHPNDVNRHVGDLGNVVFDENHYSRIDLVDDQISLSGPHGIIGRAVVLHEKADDYGK 79
HG P+D NRH+GDLGN+ + + I + D SLSG + IIGR+VV+HEK DD G+
Sbjct: 94 SHGAPDDSNRHIGDLGNIESPASGDTLISVSDSLASLSGQYSIIGRSVVIHEKTDDLGR 152
>AB190513-1|BAD51397.1| 221|Caenorhabditis elegans superoxide
dismutase protein.
Length = 221
Score = 122 bits (295), Expect = 1e-28
Identities = 57/119 (47%), Positives = 76/119 (63%)
Frame = -3
Query: 435 LSTETIRGNITFTQVQDGKVHVQGGITGLPPGEYGFHVHEKGDLSGGCLSTGSHFNPEHK 256
+ TE I G I F Q + + G ++GL G++GFH+HEKGD GCLS G H+NP
Sbjct: 36 IPTELI-GTIDFDQ-SGSFLKLNGSVSGLAAGKHGFHIHEKGDTGNGCLSAGGHYNPHKL 93
Query: 255 DHGHPNDVNRHVGDLGNVVFDENHYSRIDLVDDQISLSGPHGIIGRAVVLHEKADDYGK 79
HG P+D NRH+GDLGN+ + + I + D SLSG + IIGR+VV+HEK DD G+
Sbjct: 94 SHGAPDDSNRHIGDLGNIESPASGDTLISVSDSLASLSGQYSIIGRSVVIHEKTDDLGR 152
>AB003924-1|BAA28262.1| 176|Caenorhabditis elegans SOD4-1 protein.
Length = 176
Score = 122 bits (295), Expect = 1e-28
Identities = 57/119 (47%), Positives = 76/119 (63%)
Frame = -3
Query: 435 LSTETIRGNITFTQVQDGKVHVQGGITGLPPGEYGFHVHEKGDLSGGCLSTGSHFNPEHK 256
+ TE I G I F Q + + G ++GL G++GFH+HEKGD GCLS G H+NP
Sbjct: 36 IPTELI-GTIDFDQ-SGSFLKLNGSVSGLAAGKHGFHIHEKGDTGNGCLSAGGHYNPHKL 93
Query: 255 DHGHPNDVNRHVGDLGNVVFDENHYSRIDLVDDQISLSGPHGIIGRAVVLHEKADDYGK 79
HG P+D NRH+GDLGN+ + + I + D SLSG + IIGR+VV+HEK DD G+
Sbjct: 94 SHGAPDDSNRHIGDLGNIESPASGDTLISVSDSLASLSGQYSIIGRSVVIHEKTDDLGR 152
>U42833-3|AAA83577.1| 178|Caenorhabditis elegans Sod (superoxide
dismutase) protein5 protein.
Length = 178
Score = 111 bits (267), Expect = 3e-25
Identities = 54/125 (43%), Positives = 76/125 (60%), Gaps = 1/125 (0%)
Frame = -3
Query: 450 RAIAVLSTETIRGNITFTQVQDGK-VHVQGGITGLPPGEYGFHVHEKGDLSGGCLSTGSH 274
RA+AVL + G + TQ +G+ +G I GL PG +GFH+H+ GD + GC S G H
Sbjct: 24 RAVAVLRGTAVFGTVWLTQKAEGEETEFEGEIKGLSPGLHGFHIHQYGDSTDGCTSAGPH 83
Query: 273 FNPEHKDHGHPNDVNRHVGDLGNVVFDENHYSRIDLVDDQISLSGPHGIIGRAVVLHEKA 94
FNP +HG + V RHVGDLGNV + ++I D +SL G + +IGR++V+H
Sbjct: 84 FNPCKMNHGGRDSVVRHVGDLGNVEAGADGVAKIKFSDKVVSLFGANTVIGRSMVVHVDR 143
Query: 93 DDYGK 79
DD G+
Sbjct: 144 DDLGQ 148
>Z81110-6|CAB03260.2| 1011|Caenorhabditis elegans Hypothetical protein
T01D3.3b protein.
Length = 1011
Score = 42.3 bits (95), Expect = 2e-04
Identities = 22/71 (30%), Positives = 35/71 (49%), Gaps = 2/71 (2%)
Frame = -3
Query: 474 HHGFTTPSRAIAVLSTETIR--GNITFTQVQDGKVHVQGGITGLPPGEYGFHVHEKGDLS 301
H F + A+A+L T G TF+Q+ + + G + LP G + +H+ GD S
Sbjct: 875 HDAFVDDTIAVAILITREGAHIGRFTFSQLTSTALRIHGEVYTLPVGRHAVVLHQFGDSS 934
Query: 300 GGCLSTGSHFN 268
GC G+ F+
Sbjct: 935 EGCSRVGAPFS 945
>Z81110-2|CAB03259.1| 802|Caenorhabditis elegans Hypothetical
protein T01D3.3a protein.
Length = 802
Score = 42.3 bits (95), Expect = 2e-04
Identities = 22/71 (30%), Positives = 35/71 (49%), Gaps = 2/71 (2%)
Frame = -3
Query: 474 HHGFTTPSRAIAVLSTETIR--GNITFTQVQDGKVHVQGGITGLPPGEYGFHVHEKGDLS 301
H F + A+A+L T G TF+Q+ + + G + LP G + +H+ GD S
Sbjct: 666 HDAFVDDTIAVAILITREGAHIGRFTFSQLTSTALRIHGEVYTLPVGRHAVVLHQFGDSS 725
Query: 300 GGCLSTGSHFN 268
GC G+ F+
Sbjct: 726 EGCSRVGAPFS 736
>U39853-1|AAK39227.2| 390|Caenorhabditis elegans Hypothetical
protein F13B9.6 protein.
Length = 390
Score = 27.5 bits (58), Expect = 6.9
Identities = 9/23 (39%), Positives = 16/23 (69%)
Frame = +1
Query: 364 SLNVNLPILNLSKCDVASNRFCG 432
S+++N+P+ N +KC V +N G
Sbjct: 66 SMSINIPLFNSTKCAVVANETSG 88
>L11247-9|AAK84522.2| 639|Caenorhabditis elegans Hypothetical
protein F09G8.8 protein.
Length = 639
Score = 27.5 bits (58), Expect = 6.9
Identities = 17/41 (41%), Positives = 20/41 (48%)
Frame = -3
Query: 468 GFTTPSRAIAVLSTETIRGNITFTQVQDGKVHVQGGITGLP 346
G+TTP + I ST T R T T V K G+TG P
Sbjct: 222 GWTTPKQEICTTSTTTTRAPTTTTTVTTVK-----GVTGKP 257
>U61947-10|AAB03132.1| 932|Caenorhabditis elegans Kinesin-like
protein protein 18 protein.
Length = 932
Score = 27.1 bits (57), Expect = 9.1
Identities = 12/39 (30%), Positives = 22/39 (56%)
Frame = +1
Query: 400 KCDVASNRFCG*NGNSAGRRGEAMMSRRQSDRSQECELK 516
K ++ S + N N+ + EAMM + Q+D Q+ ++K
Sbjct: 772 KLEIQSMQLSLDNANARVKESEAMMKKLQNDEKQKFDMK 810
>AY211948-1|AAO34669.1| 932|Caenorhabditis elegans kinesin-like
protein-18 protein.
Length = 932
Score = 27.1 bits (57), Expect = 9.1
Identities = 12/39 (30%), Positives = 22/39 (56%)
Frame = +1
Query: 400 KCDVASNRFCG*NGNSAGRRGEAMMSRRQSDRSQECELK 516
K ++ S + N N+ + EAMM + Q+D Q+ ++K
Sbjct: 772 KLEIQSMQLSLDNANARVKESEAMMKKLQNDEKQKFDMK 810
>AF229855-1|AAF71303.1| 1497|Caenorhabditis elegans dual oxidase
protein.
Length = 1497
Score = 27.1 bits (57), Expect = 9.1
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = -3
Query: 237 DVNRHVGDLGNVVFDENHYSRIDLVDDQISLSGPHGI 127
D N V DL + +F H+SR+D+V I +G+
Sbjct: 391 DDNIVVEDLRDYIFGPMHFSRLDVVASSIMRGRDNGV 427
>AF043697-1|AAK73882.1| 1497|Caenorhabditis elegans Blistered
cuticle protein 3 protein.
Length = 1497
Score = 27.1 bits (57), Expect = 9.1
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = -3
Query: 237 DVNRHVGDLGNVVFDENHYSRIDLVDDQISLSGPHGI 127
D N V DL + +F H+SR+D+V I +G+
Sbjct: 391 DDNIVVEDLRDYIFGPMHFSRLDVVASSIMRGRDNGV 427
>AF003139-11|AAK73871.1| 1503|Caenorhabditis elegans Hypothetical
protein F53G12.3 protein.
Length = 1503
Score = 27.1 bits (57), Expect = 9.1
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = -3
Query: 237 DVNRHVGDLGNVVFDENHYSRIDLVDDQISLSGPHGI 127
D N V DL + +F H+SR+D+V I +G+
Sbjct: 401 DDNIVVEDLRDYIFGPMHFSRLDVVASSIMRGRDNGV 437
>AB033538-1|BAB19356.2| 930|Caenorhabditis elegans kinesin like
protein KLP-18 protein.
Length = 930
Score = 27.1 bits (57), Expect = 9.1
Identities = 12/39 (30%), Positives = 22/39 (56%)
Frame = +1
Query: 400 KCDVASNRFCG*NGNSAGRRGEAMMSRRQSDRSQECELK 516
K ++ S + N N+ + EAMM + Q+D Q+ ++K
Sbjct: 770 KLEIQSMQLSLDNANARVKESEAMMKKLQNDEKQKFDMK 808
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,876,968
Number of Sequences: 27780
Number of extensions: 259999
Number of successful extensions: 725
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 686
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 718
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1134321766
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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