Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_pT_D21
         (687 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY948417-1|AAX51226.1|  195|Homo sapiens programmed cell death 2...    30   8.9  
AL031259-3|CAD92541.1|  177|Homo sapiens programmed cell death 2...    30   8.9  

>AY948417-1|AAX51226.1|  195|Homo sapiens programmed cell death 2
           isoform 2 protein.
          Length = 195

 Score = 29.9 bits (64), Expect = 8.9
 Identities = 10/26 (38%), Positives = 18/26 (69%)
 Frame = -2

Query: 683 LPQVEEKTEYVDVXGTRGKXVEKYIH 606
           +P+V EK +Y ++ G+ GK  + +IH
Sbjct: 170 MPEVVEKEDYSEIIGSMGKQFQDFIH 195


>AL031259-3|CAD92541.1|  177|Homo sapiens programmed cell death 2
           protein.
          Length = 177

 Score = 29.9 bits (64), Expect = 8.9
 Identities = 10/26 (38%), Positives = 18/26 (69%)
 Frame = -2

Query: 683 LPQVEEKTEYVDVXGTRGKXVEKYIH 606
           +P+V EK +Y ++ G+ GK  + +IH
Sbjct: 152 MPEVVEKEDYSEIIGSMGKQFQDFIH 177


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 96,350,985
Number of Sequences: 237096
Number of extensions: 2008923
Number of successful extensions: 4209
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 4101
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4209
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 7839245960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)