Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_pT_D20
         (818 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyce...    27   4.2  
SPAC1952.05 |gcn5||histone acetyltransferase Gcn5|Schizosaccharo...    26   7.4  
SPAC1783.01 |||FAD binding protein|Schizosaccharomyces pombe|chr...    26   7.4  
SPBC19C2.09 |sre1||sterol regulatory element binding protein Sre...    25   9.8  
SPAC13G6.06c |||glycine cleavage complex subunit P|Schizosacchar...    25   9.8  
SPAC1B3.09c |||Noc2p-Noc3p complex subunit Noc2 family |Schizosa...    25   9.8  

>SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1242

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = +1

Query: 181  MMTPFTAALIWSVHLKAIFVVAWYP 255
            ++ PFT+ALI +V L ++F    YP
Sbjct: 1144 VLIPFTSALIAAVVLPSVFTYVTYP 1168


>SPAC1952.05 |gcn5||histone acetyltransferase
           Gcn5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 454

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 10/32 (31%), Positives = 21/32 (65%)
 Frame = +3

Query: 687 IVIRRLPNIPKCIIXKCFFDWHRLSIVIIAND 782
           I +++LP +PK  I +  +D + LS+ I+ ++
Sbjct: 141 IFMKQLPKMPKEYITRLIYDRNHLSMTIVKDN 172


>SPAC1783.01 |||FAD binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 583

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 9/36 (25%), Positives = 21/36 (58%)
 Frame = +3

Query: 660 STYYKYNPIIVIRRLPNIPKCIIXKCFFDWHRLSIV 767
           S+++ Y+ +   RRL N+P+ ++   ++  H   +V
Sbjct: 33  SSFHSYDELAFSRRLYNLPRTLLNSRYYSNHSHGLV 68


>SPBC19C2.09 |sre1||sterol regulatory element binding protein
           Sre1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 900

 Score = 25.4 bits (53), Expect = 9.8
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +3

Query: 261 FPWTTSIDSLVRNSVHYELTKLPQC 335
           F W  +     ++SVH EL +LP+C
Sbjct: 620 FFWNAAKKQHSKSSVHAELRELPEC 644


>SPAC13G6.06c |||glycine cleavage complex subunit
           P|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1017

 Score = 25.4 bits (53), Expect = 9.8
 Identities = 13/56 (23%), Positives = 27/56 (48%), Gaps = 5/56 (8%)
 Frame = +2

Query: 8   IFINTITALXISCFKRTHSAFFFFVGIALVQ-----XGRGHQFMYW*QASQHAASP 160
           + + TIT    +CF+    A   + G+++++      G+GH+ +     S H  +P
Sbjct: 615 LMLTTITGFDAACFQPNSGAAGEYTGLSVIRAYQRSIGQGHRNICLIPVSAHGTNP 670


>SPAC1B3.09c |||Noc2p-Noc3p complex subunit Noc2 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 528

 Score = 25.4 bits (53), Expect = 9.8
 Identities = 18/41 (43%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
 Frame = +2

Query: 215 QSISRRFSWWPGILNLSLDYKYRLVGT-QFSPLRTHQATSM 334
           +SIS+  S  P  +NL+LD   RL+ T Q+ PLR H   S+
Sbjct: 330 ESISKEIS--PIAINLTLDC-IRLIPTEQYYPLRLHLLKSL 367


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,189,516
Number of Sequences: 5004
Number of extensions: 65471
Number of successful extensions: 160
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 160
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 400438000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)