Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_pT_D19
         (591 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1289.02c |uap2||U2 snRNP-associated protein Uap2|Schizosacch...   101   6e-23
SPBC21.02 |||TLDc domain protein 2|Schizosaccharomyces pombe|chr...    31   0.095
SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protei...    29   0.38 
SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces...    28   1.2  
SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1...    27   2.0  
SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces pombe...    27   2.7  
SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomy...    27   2.7  
SPBC14C8.15 |||triglyceride lipase-cholesterol esterase |Schizos...    27   2.7  
SPAC17A2.15 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual        26   3.6  
SPBC651.03c |gyp10||GTPase activating protein Gyp10|Schizosaccha...    26   4.7  
SPBC16A3.18 |cip1||RNA-binding protein Cip1|Schizosaccharomyces ...    26   4.7  
SPAC12G12.03 |cip2||RNA-binding protein Cip2|Schizosaccharomyces...    26   4.7  
SPAC31A2.16 |gef2||RhoGEF Gef2|Schizosaccharomyces pombe|chr 1||...    25   6.2  
SPCC576.09 |rps20||40S ribosomal protein S20|Schizosaccharomyces...    25   8.3  

>SPBC1289.02c |uap2||U2 snRNP-associated protein
           Uap2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 367

 Score =  101 bits (243), Expect = 6e-23
 Identities = 57/182 (31%), Positives = 96/182 (52%), Gaps = 7/182 (3%)
 Frame = -2

Query: 578 KGDALCTYIKIESVDLALKLLDGSDCK---GNTIKVERAQFQLKGEYN---PAXXXXXXX 417
           KGDAL  + + ESV+LA +L D ++ +   G  ++V++A    K E              
Sbjct: 158 KGDALIVFFRSESVELAEQLFDDTEFRYGSGQKMRVQKANIDYKKEKTVNKDVGGALKKK 217

Query: 416 XXXXXXXXXXXXXLFDWRPEKFIGERSKH-ERVVIVKNLFHSSDFDKEVQLILDYQQDLR 240
                         +D   E+   +R K   ++V++K++F   + DK  +L++D + D+ 
Sbjct: 218 ALRLRQQQMQQISSWDDVDEEVDDKRKKRFNKIVVLKHIFTLEELDKTPELLIDLKDDIT 277

Query: 239 EECGKCGDVRKVVLYDRHPEGVAQITMKEPEQADAVVQLINGRWFGKRQITAEIWDGKTK 60
           EE  KCG V  VVLYD+ P+GV  +     E+A+A V+L+ GR+F  R + A I+DGK +
Sbjct: 278 EEAEKCGRVTNVVLYDKEPDGVVTVRFSNNEEAEACVRLMQGRYFDGRVVEASIYDGKVR 337

Query: 59  YK 54
           ++
Sbjct: 338 FQ 339


>SPBC21.02 |||TLDc domain protein 2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 511

 Score = 31.5 bits (68), Expect = 0.095
 Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 3/54 (5%)
 Frame = +3

Query: 66  FAI--PYLCSDLSFAKPSSVDQLNNSISLFRL-FHSYLCHSFRMAIIEHYFPNV 218
           FAI  P + + + F  P SV Q+N   SLFR  FH Y  ++    +  ++ P++
Sbjct: 273 FAILSPLIHAQICFFLPKSVWQVNGLTSLFRASFHGYSMYALERKMCNYHNPSI 326


>SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protein
           Tgc1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 348

 Score = 29.5 bits (63), Expect = 0.38
 Identities = 10/35 (28%), Positives = 18/35 (51%)
 Frame = -2

Query: 185 PEGVAQITMKEPEQADAVVQLINGRWFGKRQITAE 81
           P G+A +T    E  D  ++ +NG+    R+I  +
Sbjct: 88  PSGIAFVTFNNQEDVDKAIETLNGKTLDDREIVVQ 122


>SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 609

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 16/37 (43%), Positives = 21/37 (56%), Gaps = 3/37 (8%)
 Frame = -2

Query: 578 KGDALCTYIKIE---SVDLALKLLDGSDCKGNTIKVE 477
           K   L  +I  E   S D A+  L+GS  +GNT+KVE
Sbjct: 63  KSPTLFAFITFENKCSADNAIASLNGSSFQGNTLKVE 99


>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 857

 Score = 27.1 bits (57), Expect = 2.0
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = -2

Query: 206 VVLYDRHPEGVAQITMKEPEQADAVVQLINGRWFGK 99
           +V+YD  PE   +I + E EQ   +  + +G W G+
Sbjct: 731 IVIYDYSPEEENEIELVENEQIQILEFVDDGWWLGE 766


>SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1465

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 15/34 (44%), Positives = 21/34 (61%)
 Frame = +3

Query: 54   FVLSFAIPYLCSDLSFAKPSSVDQLNNSISLFRL 155
            F LS+AI  +   LSF    SVD  NN++S+ R+
Sbjct: 1165 FSLSYAIQ-ITQGLSFIVQQSVDAENNTVSVERI 1197


>SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1583

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 26/100 (26%), Positives = 48/100 (48%), Gaps = 13/100 (13%)
 Frame = -2

Query: 335  KHERVVIVKNLFHSSDFDKE---VQLILDY----QQDLREECGKCGDVRKVV--LYDRHP 183
            +++  + + +L+HSS F      V LI+ +    Q  LR +C +  +  K +  +   HP
Sbjct: 754  ENDEDIFIISLYHSSLFLNLKFFVSLIIGFLDSPQASLRTKCLRIINQMKTIPSILRTHP 813

Query: 182  EGVAQITMKEPEQA----DAVVQLINGRWFGKRQITAEIW 75
            E +AQI  K  +Q+    D V+ L+       R+   +I+
Sbjct: 814  EVLAQIISKSNDQSAIVRDTVLDLLGTYIMAYRETIPQIY 853


>SPBC14C8.15 |||triglyceride lipase-cholesterol esterase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 460

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 16/53 (30%), Positives = 28/53 (52%)
 Frame = -3

Query: 376 YLIGGQRSLLVNVLNTKE*LLLKIYSTLVILIKRFSLFWTISKI*GKNVENVE 218
           YL+ G+ S+L + +  +  L   +++ +V L  RF L WT     GKN+   +
Sbjct: 266 YLMFGRNSMLGSAVFWQAVLYPPVFAKIVDLFLRFFLSWT-----GKNISETQ 313


>SPAC17A2.15 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 69

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 16/46 (34%), Positives = 26/46 (56%), Gaps = 4/46 (8%)
 Frame = +3

Query: 57  VLSFAIPYLCSDLSFAKPSSVDQLNNSISLFRL--FHSYL--CHSF 182
           V+SF I Y C +  ++ PS+   L++ +   RL   H++L  C SF
Sbjct: 21  VVSFLINYTCDNKFYSSPSTFALLSSYLIEKRLNFLHAFLPHCRSF 66


>SPBC651.03c |gyp10||GTPase activating protein
           Gyp10|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 373

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 2/49 (4%)
 Frame = +3

Query: 33  VCISFSNFVLS--FAIPYLCSDLSFAKPSSVDQLNNSISLFRLFHSYLC 173
           VC  F  F+ S    + Y C+ +     +S+ +L    S   L HSYLC
Sbjct: 209 VCRLFDFFISSHPLTVVYTCAQVVLDNRTSIIELLWDNSGADLLHSYLC 257


>SPBC16A3.18 |cip1||RNA-binding protein Cip1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 490

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = -2

Query: 179 GVAQITMKEPEQADAVVQLINGRWFGKRQITAE 81
           G+A      PE+A  VVQ +NG     R++  E
Sbjct: 244 GLAFANFYRPEEAQVVVQTLNGYEINGRRLRVE 276


>SPAC12G12.03 |cip2||RNA-binding protein Cip2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 576

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = -2

Query: 179 GVAQITMKEPEQADAVVQLINGRWFGKRQITAE 81
           G+A      PE+A  VVQ++NG     R++  E
Sbjct: 274 GLAFANFHSPEEAKTVVQVLNGYEITGRRLRVE 306


>SPAC31A2.16 |gef2||RhoGEF Gef2|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1101

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 15/62 (24%), Positives = 30/62 (48%), Gaps = 3/62 (4%)
 Frame = +3

Query: 153  LFHSYLCHSFRMAIIEHYFPNVSTFSTFFPQILLIVQNKLNLFIK---ITRVE*IFNNNY 323
            L+ + L  +F   ++ HY PN+  ++TF   +   +  K  + +    I ++  + N N 
Sbjct: 827  LYDNILKETFNEELLSHYPPNI-IYATFQKYLSSFINRKFGVLLSSSFIQQLNTVENLNL 885

Query: 324  SF 329
            SF
Sbjct: 886  SF 887


>SPCC576.09 |rps20||40S ribosomal protein S20|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 118

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = -3

Query: 103 AKDKSLQRYGMAKLSTKLLKL 41
           AKDK L+  G  +L TK+LK+
Sbjct: 43  AKDKQLRVKGPVRLPTKILKI 63


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,129,977
Number of Sequences: 5004
Number of extensions: 37954
Number of successful extensions: 124
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 124
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 256184654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)