Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P17_pT_D19
(591 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_0376 + 24809804-24809888,24810575-24810703,24810797-248110... 84 7e-17
03_01_0373 - 2904914-2904949,2905030-2905144,2906446-2906534,290... 47 1e-05
10_08_0154 + 15266430-15266953,15267748-15267820,15267893-152679... 44 7e-05
05_07_0125 + 27861368-27862282 36 0.024
11_06_0728 + 26717018-26717306,26717494-26717598,26717789-267178... 34 0.074
11_06_0418 - 23317077-23317343,23317614-23317787,23317886-233179... 29 2.1
09_02_0328 - 7293547-7293855,7294161-7294274,7294348-7294429,729... 29 2.1
07_01_0413 - 3155080-3155274,3155628-3155933,3156062-3156163,315... 29 3.7
04_04_0979 - 29862280-29862444,29862718-29862999,29863831-298639... 29 3.7
01_06_1387 + 36944138-36944147,36944272-36944333,36944825-369448... 29 3.7
02_04_0232 + 21130122-21130454,21130895-21131053,21131424-211315... 28 4.8
10_08_0328 - 16805296-16806121,16806493-16807274 28 6.4
07_03_0036 + 12694304-12694408,12694551-12694652,12694867-126949... 28 6.4
01_07_0053 + 40772966-40773080,40773484-40773578,40773730-407738... 27 8.5
>04_04_0376 +
24809804-24809888,24810575-24810703,24810797-24811020,
24811398-24811607,24811697-24811789,24811899-24811937,
24812041-24812130,24812214-24812316,24812388-24812468,
24812929-24813005,24813156-24813236,24814165-24814256,
24814536-24814662
Length = 476
Score = 84.2 bits (199), Expect = 7e-17
Identities = 57/187 (30%), Positives = 92/187 (49%), Gaps = 4/187 (2%)
Frame = -2
Query: 578 KGDALCTYIKIESVDLALKLLDGSDCK--GNTI-KVERAQFQLKGEYNPAXXXXXXXXXX 408
KGDAL TY+K SV LA++LLDG+ + G T+ V A+F+ KG+
Sbjct: 281 KGDALVTYLKEPSVALAIQLLDGTSFRPGGKTLMSVSPAKFEQKGD---VFISKKTDKQK 337
Query: 407 XXXXXXXXXXLFDWRPEKFIGERSKHERVVIVKNLFHSSDFDKEVQLILDYQQDLREECG 228
+ W ++ VI++++F ++ + L+ + + D+REEC
Sbjct: 338 KRKTKKVEDKILGWGGHD--DKKVTITTTVILRHMFTPAELRADETLLPELEADVREECM 395
Query: 227 KCGDVRKVVLYDRHPEGVAQITMKEPEQADAVVQLINGRWFGKRQITAEIWDGKTKYK-I 51
K G V V + + HPEGV + K+ + ++ +NGRWFG QI A DG + I
Sbjct: 396 KLGPVDNVKVCENHPEGVILVKFKDRKDGIKCIEKMNGRWFGGNQIQASEDDGSINHALI 455
Query: 50 AETDADM 30
+ DA++
Sbjct: 456 RDYDAEV 462
>03_01_0373 -
2904914-2904949,2905030-2905144,2906446-2906534,
2906670-2906889,2907921-2907985,2908619-2908879,
2909204-2909417,2910643-2910698,2910891-2910947,
2911043-2911115,2912711-2913225
Length = 566
Score = 46.8 bits (106), Expect = 1e-05
Identities = 24/87 (27%), Positives = 45/87 (51%)
Frame = -2
Query: 344 ERSKHERVVIVKNLFHSSDFDKEVQLILDYQQDLREECGKCGDVRKVVLYDRHPEGVAQI 165
E + +++KN+F S + + LD + D++EEC K G V+ + + D++ G +
Sbjct: 468 ETAPPSECLLLKNMFDPS-VETDPDFDLDIKDDVQEECSKFGQVKHIFV-DKNTSGFVYL 525
Query: 164 TMKEPEQADAVVQLINGRWFGKRQITA 84
A + + ++GRWF + ITA
Sbjct: 526 RFDSITAAMSAQKALHGRWFAGKMITA 552
>10_08_0154 +
15266430-15266953,15267748-15267820,15267893-15267949,
15268248-15268303,15269584-15269797,15270497-15270538,
15270661-15270735,15270820-15270903,15271880-15271944,
15272436-15272655,15272820-15272908,15273326-15273440,
15273519-15273554
Length = 549
Score = 44.4 bits (100), Expect = 7e-05
Identities = 24/90 (26%), Positives = 47/90 (52%)
Frame = -2
Query: 320 VIVKNLFHSSDFDKEVQLILDYQQDLREECGKCGDVRKVVLYDRHPEGVAQITMKEPEQA 141
+++KN+F + + + LD + D+++EC K G V + + D++ G + A
Sbjct: 459 LLLKNMFDPA-VETDPDFDLDIKDDVQDECSKFGAVNHIFV-DKNTAGFVYLHFDSVAAA 516
Query: 140 DAVVQLINGRWFGKRQITAEIWDGKTKYKI 51
A + ++GRWF + ITA + +YK+
Sbjct: 517 TAAQRALHGRWFAGKMITATFMTAQ-QYKM 545
>05_07_0125 + 27861368-27862282
Length = 304
Score = 35.9 bits (79), Expect = 0.024
Identities = 22/73 (30%), Positives = 35/73 (47%), Gaps = 3/73 (4%)
Frame = -2
Query: 290 DFDKEVQLILDYQQDLREECGKCGDVRKVVLYDR---HPEGVAQITMKEPEQADAVVQLI 120
D +K + D+ +D+ EE K G+V + + D H G + +E EQA A +
Sbjct: 70 DPEKMQEHFEDFYEDIYEELSKFGEVETLNVCDNLADHMIGNVYVQFREEEQAVAAHNAL 129
Query: 119 NGRWFGKRQITAE 81
GR++ R I E
Sbjct: 130 QGRFYSGRPIIVE 142
>11_06_0728 +
26717018-26717306,26717494-26717598,26717789-26717870,
26717979-26718055,26719087-26719151,26719261-26719302,
26719385-26719444,26719583-26720203,26720315-26720450,
26720667-26720734,26720811-26720948
Length = 560
Score = 34.3 bits (75), Expect = 0.074
Identities = 47/188 (25%), Positives = 72/188 (38%), Gaps = 7/188 (3%)
Frame = -2
Query: 578 KGDALCTYIKIESVDLALKLLDGSDCKGNTIKVERAQFQLKGEYNPAXXXXXXXXXXXXX 399
KG A C Y + D+A L+G T+ V RA +G P
Sbjct: 387 KGYAFCVYQDLNVTDIACAALNGIKMGDKTLTVRRAN---QGAAQPRPEQESILLQAQQQ 443
Query: 398 XXXXXXXLFDWRPEKFIGERSKHERVVIVKNLFHSSDFDKEVQLILDYQQDLREECGKCG 219
+K + + V+ S+D K+ + D +D+R E GK G
Sbjct: 444 VQL----------QKLVYQVGALPTKVVCLTQVVSADELKDDEEYEDIMEDMRLEAGKYG 493
Query: 218 DVRKVVLYDRHPEG--VAQITMKEPEQADA-----VVQLINGRWFGKRQITAEIWDGKTK 60
++ KVV+ P G VA + E AD ++GR FG + A ++ + K
Sbjct: 494 NLIKVVIPRPDPSGLPVAGVGKVFLEYADVDGATKAKTAMHGRKFGGNPVVA-VFYPENK 552
Query: 59 YKIAETDA 36
+ AE DA
Sbjct: 553 FSSAEYDA 560
>11_06_0418 -
23317077-23317343,23317614-23317787,23317886-23317971,
23318125-23318244,23318338-23318368,23318457-23318532,
23318672-23318759,23318877-23318938,23319041-23319117,
23319890-23319992,23320237-23320298,23321116-23321289,
23322160-23322405
Length = 521
Score = 29.5 bits (63), Expect = 2.1
Identities = 13/48 (27%), Positives = 24/48 (50%), Gaps = 3/48 (6%)
Frame = -2
Query: 224 CGDVRKVVLYDR---HPEGVAQITMKEPEQADAVVQLINGRWFGKRQI 90
C D R V++D+ G ++ + + A + +NG+W G RQ+
Sbjct: 270 CSDAR--VMWDQKTGRSRGFGFVSFRNQQDAQNAINELNGKWLGNRQV 315
>09_02_0328 -
7293547-7293855,7294161-7294274,7294348-7294429,
7295318-7295401,7296199-7296399,7296516-7296853,
7296968-7297084
Length = 414
Score = 29.5 bits (63), Expect = 2.1
Identities = 15/45 (33%), Positives = 24/45 (53%)
Frame = -2
Query: 578 KGDALCTYIKIESVDLALKLLDGSDCKGNTIKVERAQFQLKGEYN 444
KGDA TY + A++ + D G+TI+V A+ + K Y+
Sbjct: 61 KGDATVTYEDPHAASAAVEWFNNKDFHGSTIQVHIAESKNKDTYD 105
>07_01_0413 -
3155080-3155274,3155628-3155933,3156062-3156163,
3156262-3156705
Length = 348
Score = 28.7 bits (61), Expect = 3.7
Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 3/50 (6%)
Frame = -2
Query: 236 ECGKCGDVRKVVLYDR---HPEGVAQITMKEPEQADAVVQLINGRWFGKR 96
E G+ +V+ ++YD+ G A +TM E+A +Q+ NG G R
Sbjct: 140 EAGRVDNVQ--IIYDKVTDRSRGFAFVTMATAEEAATAIQMFNGALLGGR 187
>04_04_0979 -
29862280-29862444,29862718-29862999,29863831-29863929,
29864037-29864366
Length = 291
Score = 28.7 bits (61), Expect = 3.7
Identities = 15/45 (33%), Positives = 23/45 (51%)
Frame = -2
Query: 251 QDLREECGKCGDVRKVVLYDRHPEGVAQITMKEPEQADAVVQLIN 117
+ L +CG DV + D +G A +TM E+A A V+ +N
Sbjct: 97 EKLFAQCGAVKDVEVIKGKDGKKKGFAFVTMATAEEAAAAVEKLN 141
>01_06_1387 +
36944138-36944147,36944272-36944333,36944825-36944865,
36945217-36945286,36946146-36946826,36946907-36946981,
36947057-36947163,36947264-36947370,36947463-36947522,
36947616-36947689,36947788-36947838,36948009-36948058,
36948079-36948123,36948161-36948221,36948284-36948349,
36948700-36948789,36948875-36948940,36949039-36949134,
36949219-36949308,36949371-36949388
Length = 639
Score = 28.7 bits (61), Expect = 3.7
Identities = 21/56 (37%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
Frame = +1
Query: 10 ISLTSVFMSASVSAILYLVLPSHISAVICLLPN--HLPLIS*TTASACSGSFIVIC 171
I+L+ F S V +IL LP H V+C L N H TT + S+I IC
Sbjct: 528 IALSKAFKSPVVDSIL--CLPQHQQMVLCALANTFHHCKKKATTLGELNKSYIEIC 581
>02_04_0232 +
21130122-21130454,21130895-21131053,21131424-21131582,
21132420-21132512,21133321-21133437,21133623-21133697,
21133878-21134104,21134200-21135073
Length = 678
Score = 28.3 bits (60), Expect = 4.8
Identities = 22/83 (26%), Positives = 40/83 (48%), Gaps = 4/83 (4%)
Frame = -2
Query: 284 DKEV-QLILDYQQDLREECGKCGDVRKVVLYDR---HPEGVAQITMKEPEQADAVVQLIN 117
D+E+ Q ++ +D+ E K G++ + H G + K + A +N
Sbjct: 220 DEEIEQSYEEFYEDVHTEFLKFGELVNFKVCRNGSLHLRGNVYVHYKSLDSALIAYSSMN 279
Query: 116 GRWFGKRQITAEIWDGKTKYKIA 48
GR+F +QIT E + T++K+A
Sbjct: 280 GRYFAGKQITCE-FVAVTRWKVA 301
>10_08_0328 - 16805296-16806121,16806493-16807274
Length = 535
Score = 27.9 bits (59), Expect = 6.4
Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
Frame = -2
Query: 587 NCFKGDALCTYIKIESVDLALKLLDGS--DCKGN 492
NC G A C + +E++DL+ L G DC N
Sbjct: 361 NCSSGSAFCRLLSLENLDLSNNKLTGKLPDCWWN 394
>07_03_0036 +
12694304-12694408,12694551-12694652,12694867-12694947,
12696475-12696525,12697308-12697473,12698759-12698877,
12698975-12699073,12699684-12699764,12699845-12699927,
12701177-12701402,12704272-12704439,12706408-12706800
Length = 557
Score = 27.9 bits (59), Expect = 6.4
Identities = 16/53 (30%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
Frame = -2
Query: 284 DKEVQLILD--YQQDLREECGKCGDVRKVVLYDRHPEGVAQITMKEPEQADAV 132
DKE Q ++ Y +D ++ K G V K+ + PE ++IT+K + D++
Sbjct: 362 DKETQSVIFEVYDEDRLQQDKKLG-VAKLAVNSLQPEATSEITLKLQQSLDSL 413
>01_07_0053 +
40772966-40773080,40773484-40773578,40773730-40773843,
40773984-40774088,40774179-40774250,40774293-40774346,
40774507-40774619,40774705-40774839,40774941-40775009,
40775140-40775227,40775327-40775398,40775476-40775576,
40775836-40775953,40776054-40776113,40776206-40776316,
40776499-40776573,40776821-40776854,40777453-40777805,
40778154-40778222,40778526-40778762
Length = 729
Score = 27.5 bits (58), Expect = 8.5
Identities = 13/49 (26%), Positives = 27/49 (55%)
Frame = -2
Query: 371 DWRPEKFIGERSKHERVVIVKNLFHSSDFDKEVQLILDYQQDLREECGK 225
++ PE ++ ERS ++++ N DF+++ + D+ D R+E K
Sbjct: 679 NFEPEIYMMERSARDKLIADYNTMDIWDFNEKYGELWDFTVDRRDEIVK 727
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,019,323
Number of Sequences: 37544
Number of extensions: 222232
Number of successful extensions: 610
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 598
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 610
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1400060088
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -