Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P17_pT_D19
(591 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC024844-6|AAK29956.1| 442|Caenorhabditis elegans Hypothetical ... 159 1e-39
AC024791-21|AAF60666.1| 749|Caenorhabditis elegans Rnp (rrm rna... 48 4e-06
Z73427-7|CAA97799.1| 371|Caenorhabditis elegans Hypothetical pr... 33 0.11
U79157-1|AAC26982.1| 496|Caenorhabditis elegans splicing factor... 33 0.20
AC024875-4|AAK29990.1| 143|Caenorhabditis elegans U2af splicing... 33 0.20
AC024875-3|AAK29989.1| 496|Caenorhabditis elegans U2af splicing... 33 0.20
AC024875-2|AAM44400.1| 471|Caenorhabditis elegans U2af splicing... 33 0.20
AC024875-1|AAL00879.1| 474|Caenorhabditis elegans U2af splicing... 33 0.20
U28944-7|AAN63457.1| 295|Caenorhabditis elegans Hypothetical pr... 31 0.61
U28944-6|AAN63456.1| 305|Caenorhabditis elegans Hypothetical pr... 31 0.61
U28944-5|AAK68191.1| 408|Caenorhabditis elegans Hypothetical pr... 31 0.61
U28944-4|AAK68192.1| 376|Caenorhabditis elegans Hypothetical pr... 31 0.61
AM419898-1|CAL99238.1| 1121|Caenorhabditis elegans cation transp... 30 1.4
AL132876-34|CAD21662.2| 1121|Caenorhabditis elegans Hypothetical... 30 1.4
U70856-4|AAB09167.1| 2090|Caenorhabditis elegans Hypothetical pr... 29 1.9
U70856-3|AAB09166.1| 2153|Caenorhabditis elegans Gei-4(four) int... 29 1.9
AC024826-10|AAM97977.1| 435|Caenorhabditis elegans Hypothetical... 29 1.9
AC024826-8|AAF60795.2| 580|Caenorhabditis elegans Hypothetical ... 29 1.9
Z81120-1|CAB03342.1| 207|Caenorhabditis elegans Hypothetical pr... 29 2.5
Z93339-1|CAB07544.1| 2105|Caenorhabditis elegans Hypothetical pr... 29 3.3
Z70203-7|CAA94110.1| 2105|Caenorhabditis elegans Hypothetical pr... 29 3.3
AL023825-2|CAA19443.1| 2105|Caenorhabditis elegans Hypothetical ... 29 3.3
Z81548-1|CAB04464.1| 1217|Caenorhabditis elegans Hypothetical pr... 28 5.7
AF026209-10|AAB71273.2| 355|Caenorhabditis elegans Serpentine r... 28 5.7
AL110485-8|CAB60356.1| 434|Caenorhabditis elegans Hypothetical ... 27 7.5
Z36238-4|CAD82915.1| 286|Caenorhabditis elegans Hypothetical pr... 27 10.0
Z36238-3|CAA85276.1| 404|Caenorhabditis elegans Hypothetical pr... 27 10.0
DQ485531-1|ABF22491.1| 404|Caenorhabditis elegans RNA-binding p... 27 10.0
AC084158-16|AAK68571.2| 347|Caenorhabditis elegans Hypothetical... 27 10.0
>AC024844-6|AAK29956.1| 442|Caenorhabditis elegans Hypothetical
protein Y65B4A.1 protein.
Length = 442
Score = 159 bits (386), Expect = 1e-39
Identities = 73/182 (40%), Positives = 111/182 (60%)
Frame = -2
Query: 578 KGDALCTYIKIESVDLALKLLDGSDCKGNTIKVERAQFQLKGEYNPAXXXXXXXXXXXXX 399
KGD C YIK ESV+LA +LDG++ G +KVE A+F++KG+++PA
Sbjct: 227 KGDGRCCYIKKESVELACNILDGANLNGREVKVEEARFEMKGDFDPARKRRKLTAAQKKR 286
Query: 398 XXXXXXXLFDWRPEKFIGERSKHERVVIVKNLFHSSDFDKEVQLILDYQQDLREECGKCG 219
+F+W P+K R K + VIVKNLF +K L+LD ++++ + C K G
Sbjct: 287 YMEQQNKIFEWTPDKPRNYRPKSDCTVIVKNLFTQEMMNKNAALMLDLKEEMTQSCQKYG 346
Query: 218 DVRKVVLYDRHPEGVAQITMKEPEQADAVVQLINGRWFGKRQITAEIWDGKTKYKIAETD 39
V+KVV+Y HP+GV +T E++D V+ ++GR R++TAE+WDG+TK+K+ ET+
Sbjct: 347 IVKKVVVYANHPDGVVSVTFPTTEESDMAVKYLHGRVVDGRKLTAELWDGRTKFKVEETE 406
Query: 38 AD 33
D
Sbjct: 407 ED 408
>AC024791-21|AAF60666.1| 749|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 6, isoform b protein.
Length = 749
Score = 48.4 bits (110), Expect = 4e-06
Identities = 27/92 (29%), Positives = 50/92 (54%), Gaps = 2/92 (2%)
Frame = -2
Query: 341 RSKHERVVIVKNLFHSSDFDKEVQLILDYQQDLREECGKCGDVRKVVLYDRHPEGVAQIT 162
R+ V++++N+ D D+ ++ ++REECGK G+V VV+ + G+ +I
Sbjct: 653 RTNRSNVIVLRNMVTPQDIDEFLE------GEIREECGKYGNVIDVVIANFASSGLVKIF 706
Query: 161 MK--EPEQADAVVQLINGRWFGKRQITAEIWD 72
+K + Q D ++GR+FG + AE +D
Sbjct: 707 VKYSDSMQVDRAKAALDGRFFGGNTVKAEAYD 738
>Z73427-7|CAA97799.1| 371|Caenorhabditis elegans Hypothetical
protein F58B3.7 protein.
Length = 371
Score = 33.5 bits (73), Expect = 0.11
Identities = 19/64 (29%), Positives = 34/64 (53%), Gaps = 5/64 (7%)
Frame = -2
Query: 260 DYQQDLREECGKCGDVRKVVLY-DRHPEGVAQITM----KEPEQADAVVQLINGRWFGKR 96
++ +++EE KCG V V+++ D E Q+ + QA ++NGR+FG R
Sbjct: 295 EFADEIKEEMEKCGQVVNVIVHVDESQEEDRQVRVFVEFTNNAQAIKAFVMMNGRFFGGR 354
Query: 95 QITA 84
++A
Sbjct: 355 SVSA 358
>U79157-1|AAC26982.1| 496|Caenorhabditis elegans splicing factor
U2AF65 protein.
Length = 496
Score = 32.7 bits (71), Expect = 0.20
Identities = 23/77 (29%), Positives = 38/77 (49%), Gaps = 6/77 (7%)
Frame = -2
Query: 284 DKEVQLILDYQQDLREECGKCGDVRKVVL---YDRHP-EGVAQITMKEPEQADA--VVQL 123
D E + IL+ D+R+EC K G VR + + Y+ HP GV ++ ++ +D
Sbjct: 414 DDEYEEILE---DVRDECSKYGIVRSLEIPRPYEDHPVPGVGKVFVEFASTSDCQRAQAA 470
Query: 122 INGRWFGKRQITAEIWD 72
+ GR F R + +D
Sbjct: 471 LTGRKFANRTVVTSYYD 487
>AC024875-4|AAK29990.1| 143|Caenorhabditis elegans U2af splicing
factor protein 1,isoform b protein.
Length = 143
Score = 32.7 bits (71), Expect = 0.20
Identities = 23/77 (29%), Positives = 38/77 (49%), Gaps = 6/77 (7%)
Frame = -2
Query: 284 DKEVQLILDYQQDLREECGKCGDVRKVVL---YDRHP-EGVAQITMKEPEQADA--VVQL 123
D E + IL+ D+R+EC K G VR + + Y+ HP GV ++ ++ +D
Sbjct: 61 DDEYEEILE---DVRDECSKYGIVRSLEIPRPYEDHPVPGVGKVFVEFASTSDCQRAQAA 117
Query: 122 INGRWFGKRQITAEIWD 72
+ GR F R + +D
Sbjct: 118 LTGRKFANRTVVTSYYD 134
>AC024875-3|AAK29989.1| 496|Caenorhabditis elegans U2af splicing
factor protein 1,isoform a protein.
Length = 496
Score = 32.7 bits (71), Expect = 0.20
Identities = 23/77 (29%), Positives = 38/77 (49%), Gaps = 6/77 (7%)
Frame = -2
Query: 284 DKEVQLILDYQQDLREECGKCGDVRKVVL---YDRHP-EGVAQITMKEPEQADA--VVQL 123
D E + IL+ D+R+EC K G VR + + Y+ HP GV ++ ++ +D
Sbjct: 414 DDEYEEILE---DVRDECSKYGIVRSLEIPRPYEDHPVPGVGKVFVEFASTSDCQRAQAA 470
Query: 122 INGRWFGKRQITAEIWD 72
+ GR F R + +D
Sbjct: 471 LTGRKFANRTVVTSYYD 487
>AC024875-2|AAM44400.1| 471|Caenorhabditis elegans U2af splicing
factor protein 1,isoform d protein.
Length = 471
Score = 32.7 bits (71), Expect = 0.20
Identities = 23/77 (29%), Positives = 38/77 (49%), Gaps = 6/77 (7%)
Frame = -2
Query: 284 DKEVQLILDYQQDLREECGKCGDVRKVVL---YDRHP-EGVAQITMKEPEQADA--VVQL 123
D E + IL+ D+R+EC K G VR + + Y+ HP GV ++ ++ +D
Sbjct: 389 DDEYEEILE---DVRDECSKYGIVRSLEIPRPYEDHPVPGVGKVFVEFASTSDCQRAQAA 445
Query: 122 INGRWFGKRQITAEIWD 72
+ GR F R + +D
Sbjct: 446 LTGRKFANRTVVTSYYD 462
>AC024875-1|AAL00879.1| 474|Caenorhabditis elegans U2af splicing
factor protein 1,isoform c protein.
Length = 474
Score = 32.7 bits (71), Expect = 0.20
Identities = 23/77 (29%), Positives = 38/77 (49%), Gaps = 6/77 (7%)
Frame = -2
Query: 284 DKEVQLILDYQQDLREECGKCGDVRKVVL---YDRHP-EGVAQITMKEPEQADA--VVQL 123
D E + IL+ D+R+EC K G VR + + Y+ HP GV ++ ++ +D
Sbjct: 392 DDEYEEILE---DVRDECSKYGIVRSLEIPRPYEDHPVPGVGKVFVEFASTSDCQRAQAA 448
Query: 122 INGRWFGKRQITAEIWD 72
+ GR F R + +D
Sbjct: 449 LTGRKFANRTVVTSYYD 465
>U28944-7|AAN63457.1| 295|Caenorhabditis elegans Hypothetical
protein C18A3.5f protein.
Length = 295
Score = 31.1 bits (67), Expect = 0.61
Identities = 18/58 (31%), Positives = 31/58 (53%), Gaps = 4/58 (6%)
Frame = -2
Query: 251 QDLREECGKCGDVRKV-VLYDRHP---EGVAQITMKEPEQADAVVQLINGRWFGKRQI 90
Q LRE GDV V+ D + +G ++ + E+A+ ++ +NG+W G+R I
Sbjct: 36 QKLREAFQPFGDVSDAKVIRDTNTTKSKGYGFVSYPKREEAERAIEQMNGQWLGRRTI 93
>U28944-6|AAN63456.1| 305|Caenorhabditis elegans Hypothetical
protein C18A3.5e protein.
Length = 305
Score = 31.1 bits (67), Expect = 0.61
Identities = 18/58 (31%), Positives = 31/58 (53%), Gaps = 4/58 (6%)
Frame = -2
Query: 251 QDLREECGKCGDVRKV-VLYDRHP---EGVAQITMKEPEQADAVVQLINGRWFGKRQI 90
Q LRE GDV V+ D + +G ++ + E+A+ ++ +NG+W G+R I
Sbjct: 46 QKLREAFQPFGDVSDAKVIRDTNTTKSKGYGFVSYPKREEAERAIEQMNGQWLGRRTI 103
>U28944-5|AAK68191.1| 408|Caenorhabditis elegans Hypothetical
protein C18A3.5a protein.
Length = 408
Score = 31.1 bits (67), Expect = 0.61
Identities = 18/58 (31%), Positives = 31/58 (53%), Gaps = 4/58 (6%)
Frame = -2
Query: 251 QDLREECGKCGDVRKV-VLYDRHP---EGVAQITMKEPEQADAVVQLINGRWFGKRQI 90
Q LRE GDV V+ D + +G ++ + E+A+ ++ +NG+W G+R I
Sbjct: 149 QKLREAFQPFGDVSDAKVIRDTNTTKSKGYGFVSYPKREEAERAIEQMNGQWLGRRTI 206
>U28944-4|AAK68192.1| 376|Caenorhabditis elegans Hypothetical
protein C18A3.5b protein.
Length = 376
Score = 31.1 bits (67), Expect = 0.61
Identities = 18/58 (31%), Positives = 31/58 (53%), Gaps = 4/58 (6%)
Frame = -2
Query: 251 QDLREECGKCGDVRKV-VLYDRHP---EGVAQITMKEPEQADAVVQLINGRWFGKRQI 90
Q LRE GDV V+ D + +G ++ + E+A+ ++ +NG+W G+R I
Sbjct: 117 QKLREAFQPFGDVSDAKVIRDTNTTKSKGYGFVSYPKREEAERAIEQMNGQWLGRRTI 174
>AM419898-1|CAL99238.1| 1121|Caenorhabditis elegans cation
transporting ATPase protein.
Length = 1121
Score = 29.9 bits (64), Expect = 1.4
Identities = 17/76 (22%), Positives = 33/76 (43%)
Frame = +3
Query: 30 HVCISFSNFVLSFAIPYLCSDLSFAKPSSVDQLNNSISLFRLFHSYLCHSFRMAIIEHYF 209
H I NF S + + F K + ++ + ++FH Y C + R+++ H
Sbjct: 988 HWKIGAKNFTTSQGLTFGEQQQLFIKGQAAAAWQITLVMSQVFHLYNCTTRRVSVFRHGL 1047
Query: 210 PNVSTFSTFFPQILLI 257
N+ + +ILL+
Sbjct: 1048 TNIVSVFAVIIEILLL 1063
>AL132876-34|CAD21662.2| 1121|Caenorhabditis elegans Hypothetical
protein Y105E8A.12a protein.
Length = 1121
Score = 29.9 bits (64), Expect = 1.4
Identities = 17/76 (22%), Positives = 33/76 (43%)
Frame = +3
Query: 30 HVCISFSNFVLSFAIPYLCSDLSFAKPSSVDQLNNSISLFRLFHSYLCHSFRMAIIEHYF 209
H I NF S + + F K + ++ + ++FH Y C + R+++ H
Sbjct: 988 HWKIGAKNFTTSQGLTFGEQQQLFIKGQAAAAWQITLVMSQVFHLYNCTTRRVSVFRHGL 1047
Query: 210 PNVSTFSTFFPQILLI 257
N+ + +ILL+
Sbjct: 1048 TNIVSVFAVIIEILLL 1063
>U70856-4|AAB09167.1| 2090|Caenorhabditis elegans Hypothetical
protein F57F4.4 protein.
Length = 2090
Score = 29.5 bits (63), Expect = 1.9
Identities = 16/55 (29%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
Frame = +3
Query: 21 LCXHVCISFSNFVLS-FAIPYLCSDLSFAKPSSVDQLNNSISLFRLFHSYLCHSF 182
LC C + S V S + + C+ S + +D NN+ L R ++Y C F
Sbjct: 731 LCDGYCATVSAVVGSDYVTAFHCAPRSMCRSLGLDNSNNTFYLDRFVNAYCCDVF 785
>U70856-3|AAB09166.1| 2153|Caenorhabditis elegans Gei-4(four)
interacting proteinprotein 1 protein.
Length = 2153
Score = 29.5 bits (63), Expect = 1.9
Identities = 16/55 (29%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
Frame = +3
Query: 21 LCXHVCISFSNFVLS-FAIPYLCSDLSFAKPSSVDQLNNSISLFRLFHSYLCHSF 182
LC C + S V S + + C+ S + +D NN+ L R ++Y C F
Sbjct: 731 LCDGYCATVSAVVGSDYVTAFHCAPRSMCRSLGLDNSNNTFYLDRFVNAYCCDVF 785
>AC024826-10|AAM97977.1| 435|Caenorhabditis elegans Hypothetical
protein Y55F3AM.3c protein.
Length = 435
Score = 29.5 bits (63), Expect = 1.9
Identities = 20/78 (25%), Positives = 34/78 (43%)
Frame = -2
Query: 317 IVKNLFHSSDFDKEVQLILDYQQDLREECGKCGDVRKVVLYDRHPEGVAQITMKEPEQAD 138
++ N+F S + E D ++D+ E+C G V + +G + A
Sbjct: 280 LLSNMFDPSK-ETEPAWDHDIREDVIEQCLAHGGALHVFVDKGSEQGNVYVKCPSIVIAH 338
Query: 137 AVVQLINGRWFGKRQITA 84
V ++GRWF + ITA
Sbjct: 339 QAVSALHGRWFSGKVITA 356
>AC024826-8|AAF60795.2| 580|Caenorhabditis elegans Hypothetical
protein Y55F3AM.3a protein.
Length = 580
Score = 29.5 bits (63), Expect = 1.9
Identities = 20/78 (25%), Positives = 34/78 (43%)
Frame = -2
Query: 317 IVKNLFHSSDFDKEVQLILDYQQDLREECGKCGDVRKVVLYDRHPEGVAQITMKEPEQAD 138
++ N+F S + E D ++D+ E+C G V + +G + A
Sbjct: 425 LLSNMFDPSK-ETEPAWDHDIREDVIEQCLAHGGALHVFVDKGSEQGNVYVKCPSIVIAH 483
Query: 137 AVVQLINGRWFGKRQITA 84
V ++GRWF + ITA
Sbjct: 484 QAVSALHGRWFSGKVITA 501
>Z81120-1|CAB03342.1| 207|Caenorhabditis elegans Hypothetical
protein T12D8.2 protein.
Length = 207
Score = 29.1 bits (62), Expect = 2.5
Identities = 14/38 (36%), Positives = 22/38 (57%)
Frame = -2
Query: 581 FKGDALCTYIKIESVDLALKLLDGSDCKGNTIKVERAQ 468
FKG A T+ + ++ A+ L+G+D +KV RAQ
Sbjct: 52 FKGFAYVTFENEQQMNTAISGLNGADFGNRVLKVNRAQ 89
>Z93339-1|CAB07544.1| 2105|Caenorhabditis elegans Hypothetical protein
Y16B4A.2 protein.
Length = 2105
Score = 28.7 bits (61), Expect = 3.3
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = -2
Query: 587 NCFKGDALCTYIKIESVDLAL 525
NCF GDAL TY+ + V A+
Sbjct: 1354 NCFAGDALVTYLSRDDVQTAI 1374
>Z70203-7|CAA94110.1| 2105|Caenorhabditis elegans Hypothetical protein
Y16B4A.2 protein.
Length = 2105
Score = 28.7 bits (61), Expect = 3.3
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = -2
Query: 587 NCFKGDALCTYIKIESVDLAL 525
NCF GDAL TY+ + V A+
Sbjct: 1354 NCFAGDALVTYLSRDDVQTAI 1374
>AL023825-2|CAA19443.1| 2105|Caenorhabditis elegans Hypothetical
protein Y16B4A.2 protein.
Length = 2105
Score = 28.7 bits (61), Expect = 3.3
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = -2
Query: 587 NCFKGDALCTYIKIESVDLAL 525
NCF GDAL TY+ + V A+
Sbjct: 1354 NCFAGDALVTYLSRDDVQTAI 1374
>Z81548-1|CAB04464.1| 1217|Caenorhabditis elegans Hypothetical
protein F54F12.1 protein.
Length = 1217
Score = 27.9 bits (59), Expect = 5.7
Identities = 9/41 (21%), Positives = 27/41 (65%)
Frame = -2
Query: 326 RVVIVKNLFHSSDFDKEVQLILDYQQDLREECGKCGDVRKV 204
++V++KN+ F+K +++++++++DL G++ K+
Sbjct: 372 KIVVIKNMKSEPKFEKVLEILVNFKKDLDALQSAVGEMPKL 412
>AF026209-10|AAB71273.2| 355|Caenorhabditis elegans Serpentine
receptor, class i protein4 protein.
Length = 355
Score = 27.9 bits (59), Expect = 5.7
Identities = 17/69 (24%), Positives = 30/69 (43%)
Frame = +3
Query: 30 HVCISFSNFVLSFAIPYLCSDLSFAKPSSVDQLNNSISLFRLFHSYLCHSFRMAIIEHYF 209
H+CI+F F+L +P L + + Q+ S + + H + + I H F
Sbjct: 99 HICITFFTFILCLQVPALLTCFIYR-----HQVAAKCSPDKTWSLSKFHLYSILFIYHIF 153
Query: 210 PNVSTFSTF 236
P + FS +
Sbjct: 154 PCLIAFSLY 162
>AL110485-8|CAB60356.1| 434|Caenorhabditis elegans Hypothetical
protein Y46G5A.13 protein.
Length = 434
Score = 27.5 bits (58), Expect = 7.5
Identities = 16/56 (28%), Positives = 28/56 (50%), Gaps = 4/56 (7%)
Frame = -2
Query: 245 LREECGKCGDVRKV-VLYDRHP---EGVAQITMKEPEQADAVVQLINGRWFGKRQI 90
LRE K G+V + ++ D + +G ++ E A+ + +NG W G+R I
Sbjct: 148 LREAFVKFGEVSEAKIIRDNNTNKGKGYGFVSYPRREDAERAIDEMNGAWLGRRTI 203
>Z36238-4|CAD82915.1| 286|Caenorhabditis elegans Hypothetical
protein R74.5b protein.
Length = 286
Score = 27.1 bits (57), Expect = 10.0
Identities = 14/54 (25%), Positives = 26/54 (48%)
Frame = -2
Query: 239 EECGKCGDVRKVVLYDRHPEGVAQITMKEPEQADAVVQLINGRWFGKRQITAEI 78
E+ G DV +++ +R +G +TM+ P+ AD NG R++ +
Sbjct: 3 EKVGPVVDV-EIIFNERGSKGFGFVTMQNPDDADRARAEFNGTTIEGRRVEVNL 55
>Z36238-3|CAA85276.1| 404|Caenorhabditis elegans Hypothetical
protein R74.5a protein.
Length = 404
Score = 27.1 bits (57), Expect = 10.0
Identities = 14/54 (25%), Positives = 26/54 (48%)
Frame = -2
Query: 239 EECGKCGDVRKVVLYDRHPEGVAQITMKEPEQADAVVQLINGRWFGKRQITAEI 78
E+ G DV +++ +R +G +TM+ P+ AD NG R++ +
Sbjct: 121 EKVGPVVDV-EIIFNERGSKGFGFVTMQNPDDADRARAEFNGTTIEGRRVEVNL 173
>DQ485531-1|ABF22491.1| 404|Caenorhabditis elegans RNA-binding
protein ASD-1 protein.
Length = 404
Score = 27.1 bits (57), Expect = 10.0
Identities = 14/54 (25%), Positives = 26/54 (48%)
Frame = -2
Query: 239 EECGKCGDVRKVVLYDRHPEGVAQITMKEPEQADAVVQLINGRWFGKRQITAEI 78
E+ G DV +++ +R +G +TM+ P+ AD NG R++ +
Sbjct: 121 EKVGPVVDV-EIIFNERGSKGFGFVTMQNPDDADRARAEFNGTTIEGRRVEVNL 173
>AC084158-16|AAK68571.2| 347|Caenorhabditis elegans Hypothetical
protein Y69A2AR.26 protein.
Length = 347
Score = 27.1 bits (57), Expect = 10.0
Identities = 21/80 (26%), Positives = 41/80 (51%), Gaps = 3/80 (3%)
Frame = -2
Query: 323 VVIVKNLFHSSDFDKEVQLILDYQQDLRE---ECGKCGDVRKVVLYDRHPEGVAQITMKE 153
V+ + LF+SSD D QLI + Q L+ + +CG ++ ++L G Q+ ++
Sbjct: 203 VLHCEQLFNSSDADLVNQLIANISQPLKRLELDEYECGLLKSLLLLSSSFPGEVQLNSQQ 262
Query: 152 PEQADAVVQLINGRWFGKRQ 93
+A + +++ R +RQ
Sbjct: 263 -SRAKCLTEMLQHRNDPERQ 281
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,539,503
Number of Sequences: 27780
Number of extensions: 207617
Number of successful extensions: 649
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 632
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 646
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1247656244
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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