Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_pT_D19
         (591 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ288392-1|ABC41342.1|  120|Apis mellifera nanos protein.              22   3.9  
D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.    22   5.2  
AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase pro...    22   5.2  
AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc fi...    21   6.8  
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    21   9.0  
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    21   9.0  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    21   9.0  
AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength rhodo...    21   9.0  

>DQ288392-1|ABC41342.1|  120|Apis mellifera nanos protein.
          Length = 120

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 7/13 (53%), Positives = 8/13 (61%)
 Frame = -2

Query: 233 CGKCGDVRKVVLY 195
           CG CGD+   V Y
Sbjct: 78  CGACGDIAHTVKY 90


>D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.
          Length = 567

 Score = 21.8 bits (44), Expect = 5.2
 Identities = 6/11 (54%), Positives = 9/11 (81%)
 Frame = +3

Query: 69  AIPYLCSDLSF 101
           A+PY+C D+ F
Sbjct: 224 ALPYICEDMRF 234


>AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase
           protein.
          Length = 567

 Score = 21.8 bits (44), Expect = 5.2
 Identities = 6/11 (54%), Positives = 9/11 (81%)
 Frame = +3

Query: 69  AIPYLCSDLSF 101
           A+PY+C D+ F
Sbjct: 224 ALPYICEDMRF 234


>AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc
           finger domain-Z3 isoform protein.
          Length = 92

 Score = 21.4 bits (43), Expect = 6.8
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -3

Query: 118 TEDGLAKDKSLQRYGMAKLSTKLLK 44
           T++ L   KSLQ  G + +  +LLK
Sbjct: 47  TKNSLTTHKSLQHRGSSGMLKRLLK 71


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -3

Query: 292 VILIKRFSLFWTISKI*GKN 233
           +I I  FSL WTI+ + G N
Sbjct: 172 IIAIWLFSLGWTIAPMFGWN 191


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 8/20 (40%), Positives = 9/20 (45%)
 Frame = -3

Query: 523 NCWMAAIVKAIPLKWKELNF 464
           NCW+  I     LKW    F
Sbjct: 55  NCWVTQIWTDHHLKWNASEF 74


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 7/21 (33%), Positives = 12/21 (57%)
 Frame = +1

Query: 49  AILYLVLPSHISAVICLLPNH 111
           A++Y +LP H++A       H
Sbjct: 755 ALIYNILPPHVAAYFLSRARH 775


>AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 154

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -3

Query: 292 VILIKRFSLFWTISKI*GKN 233
           +I I  FSL WTI+ + G N
Sbjct: 48  IIAIWLFSLGWTIAPMFGWN 67


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 139,129
Number of Sequences: 438
Number of extensions: 2415
Number of successful extensions: 10
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17237673
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)