Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_pT_D13
         (630 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3D6.03c |||tRNA endonuclease |Schizosaccharomyces pombe|chr ...    28   1.3  
SPAC1952.08c |||pyridoxamine 5'-phosphate oxidase |Schizosacchar...    27   2.2  
SPAC1B1.02c |||NAD/NADH kinase |Schizosaccharomyces pombe|chr 1|...    26   5.2  
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce...    26   5.2  
SPAC6F6.03c |||ribosome export GTPase|Schizosaccharomyces pombe|...    25   6.8  
SPBC1718.06 |msp1|mgm1|mitochondrial GTPase Msp1|Schizosaccharom...    25   9.0  
SPBC2G5.04c |||COPII-coated vesicle component Erv41 |Schizosacch...    25   9.0  

>SPBC3D6.03c |||tRNA endonuclease |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 678

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = -2

Query: 179 NSWGPDWGVEGYLLISSRNNNCGIATRTNLRSLLKQSESL 60
           N+WG   G+ GYL  S   N  G+     + S++K+S  L
Sbjct: 112 NAWGITAGLFGYLQSSGIQNTWGLHAPKPVISIIKKSHHL 151


>SPAC1952.08c |||pyridoxamine 5'-phosphate oxidase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 190

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 15/61 (24%), Positives = 29/61 (47%)
 Frame = +3

Query: 396 ANRVNGAHIFNIADTVRICVRSIFFFGW*TEFHHPIIRCIVGSTLAPTAAVRPGAVQDCL 575
           A++V+ +H F     ++ C+ S  +    T FH      ++  T  P  +  P  V+DC+
Sbjct: 2   ASKVDSSHEF--PSQIKRCLSSSKYIQLATCFHDQPHSSLMTFTYLPAGSAAPYEVEDCI 59

Query: 576 V 578
           +
Sbjct: 60  I 60


>SPAC1B1.02c |||NAD/NADH kinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 537

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 14/60 (23%), Positives = 27/60 (45%), Gaps = 1/60 (1%)
 Frame = -2

Query: 518 DNAAYDWMMKFGLPTEEEYGSYTNADGIC-NIKNMSTIYPIRGWTDVTPLNVEALKVAAV 342
           D     +M+   L  E EY +   +DG+C +    ST Y +     +    + A+ ++A+
Sbjct: 373 DRGPNPFMISLDLYVENEYITTLQSDGVCVSTPTGSTAYSVAAGGSLCHPGIPAILISAI 432


>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1036

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 18/68 (26%), Positives = 32/68 (47%)
 Frame = -3

Query: 292 STPVAYSMTPPAQLNA*TMRWR*SATVNATATPIGSSKTPGAPTGESKDTC*FHPVTTTA 113
           +T  + S TP   +N+ T         +A++TP+ S  +  A +  S      +  T+T+
Sbjct: 349 TTATSASSTPLTSVNSTT-------ATSASSTPLTSVNSTSATSASSTPLTSANSTTSTS 401

Query: 112 VSQXEPTY 89
           VS   P+Y
Sbjct: 402 VSSTAPSY 409



 Score = 25.8 bits (54), Expect = 5.2
 Identities = 18/68 (26%), Positives = 32/68 (47%)
 Frame = -3

Query: 292 STPVAYSMTPPAQLNA*TMRWR*SATVNATATPIGSSKTPGAPTGESKDTC*FHPVTTTA 113
           +T  + S TP   +N+ T         +A++TP+ S  +  A +  S      +  T+T+
Sbjct: 463 TTATSASSTPLTSVNSTT-------ATSASSTPLTSVNSTSATSASSTPLTSANSTTSTS 515

Query: 112 VSQXEPTY 89
           VS   P+Y
Sbjct: 516 VSSTAPSY 523


>SPAC6F6.03c |||ribosome export GTPase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 537

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = -2

Query: 434 CNIKNMSTIYPIRGWTDVT 378
           C +K++   Y I GW D T
Sbjct: 402 CKVKHLERTYEISGWNDST 420


>SPBC1718.06 |msp1|mgm1|mitochondrial GTPase
           Msp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 903

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +1

Query: 61  KLSDCFSRLRKLVLVAIPQLLLRDEISK 144
           KL  C S L ++ L  +  LL+ D ISK
Sbjct: 629 KLDSCVSTLTRMGLGRVSTLLVTDSISK 656


>SPBC2G5.04c |||COPII-coated vesicle component Erv41
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 333

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 15/54 (27%), Positives = 28/54 (51%), Gaps = 4/54 (7%)
 Frame = +3

Query: 171 PGVFDD----PIGVAVAFTVAD*RHLMVQAFSCAGGVIEYATGVERKFISSINR 320
           PG+F D    P+ V V     +    +++  + +GG+I  A+ +ER + S  +R
Sbjct: 263 PGIFIDYDLEPLAVRVVDKHPNVASTLLRILAISGGLITVASWIERVYSSRAHR 316


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,533,029
Number of Sequences: 5004
Number of extensions: 51406
Number of successful extensions: 119
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 119
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 279695522
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)