Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P17_pT_D12
(334 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC3B9.13c |rpp102|rpp1-2|60S acidic ribosomal protein Rpp1-2|S... 57 8e-10
SPAC644.15 |rpp101|rpp1-1|60S acidic ribosomal protein Rpp1-1|Sc... 57 8e-10
SPCP1E11.09c |rpp103|rpp1-3|60S acidic ribosomal protein Rpp1-3|... 52 2e-08
SPAC1834.02 |aro1||pentafunctional aromatic polypeptide Aro1 |Sc... 29 0.25
SPCC1753.01c |ssb2|SPCC584.06c, rpa2|single-stranded DNA binding... 26 1.3
SPAC144.07c |||conserved eukaryotic protein|Schizosaccharomyces ... 25 4.0
SPBC1709.17 |||folylpolyglutamate synthase|Schizosaccharomyces p... 24 7.0
SPAC2E1P3.02c |amt3||ammonium transporter Amt3|Schizosaccharomyc... 23 9.2
SPAC1250.01 |snf21|SPAC29A4.21|ATP-dependent DNA helicase Snf21|... 23 9.2
SPBC1826.01c |mot1||TATA-binding protein associated factor Mot1|... 23 9.2
>SPBC3B9.13c |rpp102|rpp1-2|60S acidic ribosomal protein
Rpp1-2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 110
Score = 56.8 bits (131), Expect = 8e-10
Identities = 26/50 (52%), Positives = 36/50 (72%)
Frame = -1
Query: 241 VSKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKDL 92
+S +ELA YSALIL D+ + +T +K+ ++ KAA VDVEP W +FAK L
Sbjct: 1 MSASELATSYSALILADEGIEITSDKLLSLTKAANVDVEPIWATIFAKAL 50
Score = 23.4 bits (48), Expect = 9.2
Identities = 9/17 (52%), Positives = 14/17 (82%)
Frame = -2
Query: 99 KTLEGINVRDLITNIGS 49
K LEG ++++L+ NIGS
Sbjct: 48 KALEGKDLKELLLNIGS 64
>SPAC644.15 |rpp101|rpp1-1|60S acidic ribosomal protein
Rpp1-1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 109
Score = 56.8 bits (131), Expect = 8e-10
Identities = 26/50 (52%), Positives = 36/50 (72%)
Frame = -1
Query: 241 VSKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKDL 92
+S +ELA YSALIL D+ + +T +K+ ++ KAA VDVEP W +FAK L
Sbjct: 1 MSASELATSYSALILADEGIEITSDKLLSLTKAANVDVEPIWATIFAKAL 50
Score = 25.8 bits (54), Expect = 1.7
Identities = 10/18 (55%), Positives = 15/18 (83%)
Frame = -2
Query: 99 KTLEGINVRDLITNIGSG 46
K LEG ++++L+ NIGSG
Sbjct: 48 KALEGKDLKELLLNIGSG 65
>SPCP1E11.09c |rpp103|rpp1-3|60S acidic ribosomal protein
Rpp1-3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 109
Score = 52.4 bits (120), Expect = 2e-08
Identities = 23/50 (46%), Positives = 35/50 (70%)
Frame = -1
Query: 241 VSKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKDL 92
+S +ELA Y+ALIL D+ + +T +K+ ++ KA V+VEP W +FAK L
Sbjct: 1 MSASELATSYAALILADEGIEITSDKLLSLTKAGNVEVEPIWATIFAKAL 50
Score = 23.4 bits (48), Expect = 9.2
Identities = 9/17 (52%), Positives = 14/17 (82%)
Frame = -2
Query: 99 KTLEGINVRDLITNIGS 49
K LEG ++++L+ NIGS
Sbjct: 48 KALEGKDLKELLLNIGS 64
>SPAC1834.02 |aro1||pentafunctional aromatic polypeptide Aro1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1573
Score = 28.7 bits (61), Expect = 0.25
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +2
Query: 59 LVIRSRTLMPSKVFGEQTWPIWLYIYSRRF 148
L+ SRTL+ K E+TWP W + + F
Sbjct: 812 LICPSRTLIIDKACVEKTWPYWWDVLHQSF 841
>SPCC1753.01c |ssb2|SPCC584.06c, rpa2|single-stranded DNA binding
protein Ssb2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 279
Score = 26.2 bits (55), Expect = 1.3
Identities = 9/21 (42%), Positives = 16/21 (76%)
Frame = -2
Query: 105 SPKTLEGINVRDLITNIGSGV 43
+P+T EG++VR L ++G G+
Sbjct: 228 APETNEGVHVRQLAQSVGPGI 248
>SPAC144.07c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 315
Score = 24.6 bits (51), Expect = 4.0
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = -1
Query: 277 GLRQLARSKLKMVSKAELACVYSAL 203
G+ QL + ++SKA+L C Y L
Sbjct: 159 GMLQLDMPHVNILSKADLLCTYGTL 183
>SPBC1709.17 |||folylpolyglutamate synthase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 505
Score = 23.8 bits (49), Expect = 7.0
Identities = 8/14 (57%), Positives = 10/14 (71%)
Frame = +1
Query: 127 LHLQPPLSRWWKFS 168
LH+Q L +WWK S
Sbjct: 439 LHVQEDLCKWWKES 452
>SPAC2E1P3.02c |amt3||ammonium transporter Amt3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 517
Score = 23.4 bits (48), Expect = 9.2
Identities = 14/32 (43%), Positives = 17/32 (53%)
Frame = +2
Query: 65 IRSRTLMPSKVFGEQTWPIWLYIYSRRFQDGG 160
I + TL+ S FG TW I YI R+F G
Sbjct: 302 IMTNTLISSS-FGALTWAIIDYIRYRKFSTIG 332
>SPAC1250.01 |snf21|SPAC29A4.21|ATP-dependent DNA helicase
Snf21|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1199
Score = 23.4 bits (48), Expect = 9.2
Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Frame = +3
Query: 201 MRAE*THANSAFDTIFS-FERASCRRP*LKREQARLS 308
+R + H TI + ER SCRRP L + RL+
Sbjct: 213 LRHQVMHCQPHLRTIVNAVERMSCRRPKLVPQATRLT 249
>SPBC1826.01c |mot1||TATA-binding protein associated factor
Mot1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1953
Score = 23.4 bits (48), Expect = 9.2
Identities = 12/48 (25%), Positives = 26/48 (54%)
Frame = -1
Query: 274 LRQLARSKLKMVSKAELACVYSALILVDDDVAVTGEKISTILKAAAVD 131
+R +A ++++ A + +LV+D V + G+ STI + A++
Sbjct: 1212 VRNMASKCFAAITESNAAGSKALHLLVEDVVPLLGDASSTIHRQGAIE 1259
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,343,002
Number of Sequences: 5004
Number of extensions: 25458
Number of successful extensions: 77
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 72
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 77
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 93942212
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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