Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P17_pT_D12
(334 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0113 + 897970-898038,898148-898271,898811-898896,898996-89... 66 9e-12
02_02_0220 - 7992124-7992351,7992458-7992562,7993499-7993711,799... 29 0.69
10_07_0138 + 13325418-13325954 28 2.1
05_03_0235 - 10747649-10748118,10748226-10748314,10748477-107485... 27 3.7
06_01_0025 - 244068-244177,244279-244333,244500-244527,244621-24... 27 4.9
02_05_0192 + 26602247-26602617,26602701-26603016 27 4.9
06_01_0469 + 3322886-3323564,3324033-3324953,3325025-3325155,332... 26 6.4
09_02_0048 - 3532663-3533475,3534086-3534589,3534715-3535740,353... 26 8.5
07_03_1604 - 28089032-28089079,28089161-28089371,28089484-280898... 26 8.5
>08_01_0113 +
897970-898038,898148-898271,898811-898896,898996-899049
Length = 110
Score = 65.7 bits (153), Expect = 9e-12
Identities = 28/48 (58%), Positives = 38/48 (79%)
Frame = -1
Query: 241 VSKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAK 98
+S +E+AC +ALIL DD + +T EKI+T++KAA + VE YWPGLFAK
Sbjct: 1 MSSSEVACTLAALILHDDGIPITSEKIATLVKAANIKVEAYWPGLFAK 48
>02_02_0220 -
7992124-7992351,7992458-7992562,7993499-7993711,
7993937-7994196,7994425-7994701,7995226-7995371,
7995519-7995903,7996680-7996964
Length = 632
Score = 29.5 bits (63), Expect = 0.69
Identities = 14/41 (34%), Positives = 26/41 (63%)
Frame = -1
Query: 277 GLRQLARSKLKMVSKAELACVYSALILVDDDVAVTGEKIST 155
G+R+LA+ V+K + S +L+ +DVA+TG+ ++T
Sbjct: 249 GIRKLAQIFQSSVAKKKAVGKKSKALLLGEDVAITGDCVTT 289
>10_07_0138 + 13325418-13325954
Length = 178
Score = 27.9 bits (59), Expect = 2.1
Identities = 22/79 (27%), Positives = 35/79 (44%), Gaps = 3/79 (3%)
Frame = -1
Query: 232 AELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKDLGRHQCP*PDHQHR 53
A +A V + + + + V V +++T+++AAA P L G +C + R
Sbjct: 40 AGVATVLAMVAALAEVVVVVLAEVATLVEAAAGVEARRLPDL----RGARRCSRRWRRSR 95
Query: 52 LWSGCCSGRW---WSASRC 5
W CS RW W RC
Sbjct: 96 RWRSRCSRRWRRSWRRRRC 114
>05_03_0235 -
10747649-10748118,10748226-10748314,10748477-10748574,
10748934-10749046,10749107-10749200,10749557-10749589,
10749734-10749851,10750110-10750210,10751036-10751233,
10751337-10751471,10751752-10751830,10753650-10753738,
10753835-10753987,10754100-10754285
Length = 651
Score = 27.1 bits (57), Expect = 3.7
Identities = 9/17 (52%), Positives = 11/17 (64%)
Frame = +1
Query: 169 HQLRQHHHPPG*EQSKH 219
HQ R+HHHPP + H
Sbjct: 562 HQRRRHHHPPAWDVEGH 578
>06_01_0025 -
244068-244177,244279-244333,244500-244527,244621-244691,
244829-244926,245069-245186,245573-245636,245744-245808,
245893-245928,246255-246311,246422-246691
Length = 323
Score = 26.6 bits (56), Expect = 4.9
Identities = 12/35 (34%), Positives = 18/35 (51%)
Frame = +1
Query: 82 DAFQGLWRTDLANMALHLQPPLSRWWKFSHQLRQH 186
+ + +W+TD H + L W F H+LRQH
Sbjct: 229 EVWANVWQTDCIARVSH-EDGLVVGWIFLHELRQH 262
>02_05_0192 + 26602247-26602617,26602701-26603016
Length = 228
Score = 26.6 bits (56), Expect = 4.9
Identities = 10/18 (55%), Positives = 11/18 (61%)
Frame = -1
Query: 55 RLWSGCCSGRWWSASRCC 2
RL +G GRWWSA C
Sbjct: 47 RLSAGSGCGRWWSAGDAC 64
>06_01_0469 +
3322886-3323564,3324033-3324953,3325025-3325155,
3325237-3325317,3328173-3328820
Length = 819
Score = 26.2 bits (55), Expect = 6.4
Identities = 21/60 (35%), Positives = 26/60 (43%)
Frame = -1
Query: 268 QLARSKLKMVSKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKDLG 89
Q A LK K +AC L+LV DD T T+ KA A D+ G + LG
Sbjct: 657 QAADHALKRQVKHSVACGVDWLVLVSDDSDFT----DTVRKARAADLRTVVVGDGCRALG 712
>09_02_0048 - 3532663-3533475,3534086-3534589,3534715-3535740,
3536083-3536226,3536974-3537375,3537499-3537721,
3537830-3542368,3542480-3542599,3543005-3543038,
3543922-3544102,3544198-3544815,3545022-3551098,
3551139-3551304,3551508-3551614,3552056-3552178,
3553417-3553642
Length = 5100
Score = 25.8 bits (54), Expect = 8.5
Identities = 9/26 (34%), Positives = 13/26 (50%)
Frame = +1
Query: 121 MALHLQPPLSRWWKFSHQLRQHHHPP 198
+ LH +P L W +F +QH P
Sbjct: 4466 LVLHFEPYLMNWSEFDQLQKQHEENP 4491
>07_03_1604 -
28089032-28089079,28089161-28089371,28089484-28089853,
28090034-28090199
Length = 264
Score = 25.8 bits (54), Expect = 8.5
Identities = 8/14 (57%), Positives = 12/14 (85%)
Frame = -2
Query: 219 VFTLLSSWWMMMLP 178
+F+++SSWWM LP
Sbjct: 30 LFSIISSWWMNPLP 43
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,640,486
Number of Sequences: 37544
Number of extensions: 202806
Number of successful extensions: 536
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 527
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 534
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 459426840
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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