Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P17_pT_D12
(334 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC087079-6|AAK27864.1| 111|Caenorhabditis elegans Ribosomal pro... 84 3e-17
U89307-1|AAB48625.1| 111|Caenorhabditis elegans ribosomal prote... 80 3e-16
Z81030-5|CAB02709.1| 324|Caenorhabditis elegans Hypothetical pr... 30 0.46
U41532-4|AAK68320.1| 767|Caenorhabditis elegans Hypothetical pr... 28 1.9
U41532-3|AAK68319.1| 797|Caenorhabditis elegans Hypothetical pr... 28 1.9
Z74026-5|CAA98419.3| 3517|Caenorhabditis elegans Hypothetical pr... 27 2.5
Z72513-4|CAA96672.3| 3517|Caenorhabditis elegans Hypothetical pr... 27 2.5
U41554-3|AAA83298.2| 745|Caenorhabditis elegans Nematode astaci... 27 3.3
Z75955-6|CAB00120.1| 451|Caenorhabditis elegans Hypothetical pr... 26 5.7
AF039043-1|AAB94194.1| 5105|Caenorhabditis elegans Hypothetical ... 26 5.7
AF036704-5|AAB88558.2| 360|Caenorhabditis elegans Hypothetical ... 26 5.7
Z92837-1|CAB07400.1| 1043|Caenorhabditis elegans Hypothetical pr... 26 7.5
AY372076-1|AAQ75758.1| 1043|Caenorhabditis elegans SYM-4 protein. 26 7.5
Z75552-8|CAD54158.1| 939|Caenorhabditis elegans Hypothetical pr... 25 10.0
Z75552-7|CAA99943.3| 944|Caenorhabditis elegans Hypothetical pr... 25 10.0
Z75539-5|CAD54134.1| 939|Caenorhabditis elegans Hypothetical pr... 25 10.0
Z75539-4|CAA99846.3| 944|Caenorhabditis elegans Hypothetical pr... 25 10.0
U51999-4|AAA96085.2| 627|Caenorhabditis elegans Hypothetical pr... 25 10.0
U51994-2|AAA96065.3| 1311|Caenorhabditis elegans Hypothetical pr... 25 10.0
>AC087079-6|AAK27864.1| 111|Caenorhabditis elegans Ribosomal
protein, acidic protein 1 protein.
Length = 111
Score = 83.8 bits (198), Expect = 3e-17
Identities = 38/51 (74%), Positives = 44/51 (86%)
Frame = -1
Query: 244 MVSKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKDL 92
M S ELACVY+ALIL DD+VA+TGEKI+T+LKAA V+ EPYWPGLFAK L
Sbjct: 1 MASNQELACVYAALILQDDEVAITGEKIATLLKAANVEFEPYWPGLFAKAL 51
Score = 27.5 bits (58), Expect = 2.5
Identities = 10/18 (55%), Positives = 16/18 (88%)
Frame = -2
Query: 99 KTLEGINVRDLITNIGSG 46
K LEG++V++LIT++ SG
Sbjct: 49 KALEGVDVKNLITSVSSG 66
>U89307-1|AAB48625.1| 111|Caenorhabditis elegans ribosomal protein
P1 homolog protein.
Length = 111
Score = 80.2 bits (189), Expect = 3e-16
Identities = 37/51 (72%), Positives = 43/51 (84%)
Frame = -1
Query: 244 MVSKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKDL 92
M S ELACVY+ALIL DD+VA+TGEKI+T+LKAA V+ EP WPGLFAK L
Sbjct: 1 MASNQELACVYAALILQDDEVAITGEKIATLLKAANVEFEPNWPGLFAKAL 51
Score = 27.5 bits (58), Expect = 2.5
Identities = 10/18 (55%), Positives = 16/18 (88%)
Frame = -2
Query: 99 KTLEGINVRDLITNIGSG 46
K LEG++V++LIT++ SG
Sbjct: 49 KALEGVDVKNLITSVSSG 66
>Z81030-5|CAB02709.1| 324|Caenorhabditis elegans Hypothetical
protein C01G10.7 protein.
Length = 324
Score = 29.9 bits (64), Expect = 0.46
Identities = 18/56 (32%), Positives = 31/56 (55%)
Frame = -1
Query: 256 SKLKMVSKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKDLG 89
S KM+ K + S ++ ++D VA+T + + + AAA+D PY L ++LG
Sbjct: 34 SNQKMLDKVPMMQADSVVLELEDGVALTAKADARVRAAAALDKLPYHT-LACQELG 88
>U41532-4|AAK68320.1| 767|Caenorhabditis elegans Hypothetical
protein F11D5.3b protein.
Length = 767
Score = 27.9 bits (59), Expect = 1.9
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +2
Query: 62 VIRSRTLMPSKVFGEQTWPIWLYIYSRR 145
V+ + PSK++ EQ P W Y SRR
Sbjct: 718 VLSRPRMCPSKLYNEQILPCWNYESSRR 745
>U41532-3|AAK68319.1| 797|Caenorhabditis elegans Hypothetical
protein F11D5.3a protein.
Length = 797
Score = 27.9 bits (59), Expect = 1.9
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +2
Query: 62 VIRSRTLMPSKVFGEQTWPIWLYIYSRR 145
V+ + PSK++ EQ P W Y SRR
Sbjct: 748 VLSRPRMCPSKLYNEQILPCWNYESSRR 775
>Z74026-5|CAA98419.3| 3517|Caenorhabditis elegans Hypothetical protein
T04F3.1 protein.
Length = 3517
Score = 27.5 bits (58), Expect = 2.5
Identities = 15/37 (40%), Positives = 20/37 (54%)
Frame = +3
Query: 141 AAFKMVEIFSPVTATSSSTRMRAE*THANSAFDTIFS 251
A M EIFSPV++T+ R + S +DTI S
Sbjct: 2794 AGIPMDEIFSPVSSTADGNRRFSNFYEDRSGWDTIGS 2830
>Z72513-4|CAA96672.3| 3517|Caenorhabditis elegans Hypothetical protein
T04F3.1 protein.
Length = 3517
Score = 27.5 bits (58), Expect = 2.5
Identities = 15/37 (40%), Positives = 20/37 (54%)
Frame = +3
Query: 141 AAFKMVEIFSPVTATSSSTRMRAE*THANSAFDTIFS 251
A M EIFSPV++T+ R + S +DTI S
Sbjct: 2794 AGIPMDEIFSPVSSTADGNRRFSNFYEDRSGWDTIGS 2830
>U41554-3|AAA83298.2| 745|Caenorhabditis elegans Nematode astacin
protease protein38 protein.
Length = 745
Score = 27.1 bits (57), Expect = 3.3
Identities = 9/18 (50%), Positives = 11/18 (61%)
Frame = -1
Query: 58 HRLWSGCCSGRWWSASRC 5
H LW GCC G + S +C
Sbjct: 689 HILWRGCCVGLFRSGDQC 706
>Z75955-6|CAB00120.1| 451|Caenorhabditis elegans Hypothetical
protein R07B7.11 protein.
Length = 451
Score = 26.2 bits (55), Expect = 5.7
Identities = 8/32 (25%), Positives = 21/32 (65%)
Frame = -1
Query: 241 VSKAELACVYSALILVDDDVAVTGEKISTILK 146
+S+ + C++SA +++ +D+ + G+ +LK
Sbjct: 265 ISQFTVWCIWSAPLIMSNDLRIIGDSFKDVLK 296
>AF039043-1|AAB94194.1| 5105|Caenorhabditis elegans Hypothetical
protein F39C12.1 protein.
Length = 5105
Score = 26.2 bits (55), Expect = 5.7
Identities = 18/59 (30%), Positives = 25/59 (42%)
Frame = -3
Query: 254 KTKNGVKS*ISMCLLCSHPGG**CCRNW*ENFHHLESGGCRCRAILARSVRQRPWKASM 78
K N S S+C +C+H G W E + GC CR RS + + KA +
Sbjct: 5007 KDYNESFSQFSICNICNHGGHVNHIATWFETEKYCPVAGCDCRC--QRSKQTKHLKARL 5063
>AF036704-5|AAB88558.2| 360|Caenorhabditis elegans Hypothetical
protein ZK185.1 protein.
Length = 360
Score = 26.2 bits (55), Expect = 5.7
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = +3
Query: 222 ANSAFDTIFSFERASCRRP*LKREQARLSSDNK 320
A++++ IFSF + R +KRE AR S + +
Sbjct: 190 ASTSYTIIFSFHKVDKARRRIKREMARKSLERR 222
>Z92837-1|CAB07400.1| 1043|Caenorhabditis elegans Hypothetical protein
R03E1.1 protein.
Length = 1043
Score = 25.8 bits (54), Expect = 7.5
Identities = 11/38 (28%), Positives = 20/38 (52%)
Frame = +1
Query: 82 DAFQGLWRTDLANMALHLQPPLSRWWKFSHQLRQHHHP 195
D F +WR +AL ++ + WW+ ++R H+ P
Sbjct: 913 DKFVYIWRASDTTVALSVRKDRNSWWE---RVRTHNAP 947
>AY372076-1|AAQ75758.1| 1043|Caenorhabditis elegans SYM-4 protein.
Length = 1043
Score = 25.8 bits (54), Expect = 7.5
Identities = 11/38 (28%), Positives = 20/38 (52%)
Frame = +1
Query: 82 DAFQGLWRTDLANMALHLQPPLSRWWKFSHQLRQHHHP 195
D F +WR +AL ++ + WW+ ++R H+ P
Sbjct: 913 DKFVYIWRASDTTVALSVRKDRNSWWE---RVRTHNAP 947
>Z75552-8|CAD54158.1| 939|Caenorhabditis elegans Hypothetical
protein F28C1.3b protein.
Length = 939
Score = 25.4 bits (53), Expect = 10.0
Identities = 14/39 (35%), Positives = 21/39 (53%)
Frame = +3
Query: 96 SLANRPGQYGSTSTAAAFKMVEIFSPVTATSSSTRMRAE 212
S + PG S+S + + K ++ VTA SSS+ AE
Sbjct: 639 SYGSNPGPLDSSSNSESMKTIKKSFTVTAASSSSLPLAE 677
>Z75552-7|CAA99943.3| 944|Caenorhabditis elegans Hypothetical
protein F28C1.3a protein.
Length = 944
Score = 25.4 bits (53), Expect = 10.0
Identities = 14/39 (35%), Positives = 21/39 (53%)
Frame = +3
Query: 96 SLANRPGQYGSTSTAAAFKMVEIFSPVTATSSSTRMRAE 212
S + PG S+S + + K ++ VTA SSS+ AE
Sbjct: 644 SYGSNPGPLDSSSNSESMKTIKKSFTVTAASSSSLPLAE 682
>Z75539-5|CAD54134.1| 939|Caenorhabditis elegans Hypothetical
protein F28C1.3b protein.
Length = 939
Score = 25.4 bits (53), Expect = 10.0
Identities = 14/39 (35%), Positives = 21/39 (53%)
Frame = +3
Query: 96 SLANRPGQYGSTSTAAAFKMVEIFSPVTATSSSTRMRAE 212
S + PG S+S + + K ++ VTA SSS+ AE
Sbjct: 639 SYGSNPGPLDSSSNSESMKTIKKSFTVTAASSSSLPLAE 677
>Z75539-4|CAA99846.3| 944|Caenorhabditis elegans Hypothetical
protein F28C1.3a protein.
Length = 944
Score = 25.4 bits (53), Expect = 10.0
Identities = 14/39 (35%), Positives = 21/39 (53%)
Frame = +3
Query: 96 SLANRPGQYGSTSTAAAFKMVEIFSPVTATSSSTRMRAE 212
S + PG S+S + + K ++ VTA SSS+ AE
Sbjct: 644 SYGSNPGPLDSSSNSESMKTIKKSFTVTAASSSSLPLAE 682
>U51999-4|AAA96085.2| 627|Caenorhabditis elegans Hypothetical
protein C43H6.4 protein.
Length = 627
Score = 25.4 bits (53), Expect = 10.0
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = -1
Query: 166 KISTILKAAAVDVEPYWPGLFAKDLGRH 83
+I T LKA +++P W AK++ H
Sbjct: 409 QIDTKLKAVMTEIDPDWQEKIAKEIDFH 436
>U51994-2|AAA96065.3| 1311|Caenorhabditis elegans Hypothetical
protein R03G5.3 protein.
Length = 1311
Score = 25.4 bits (53), Expect = 10.0
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = -3
Query: 329 ELLFVVRTQTCLFSLELRPTATCT 258
+L ++ T LFSLEL P+ CT
Sbjct: 684 KLTMILSTAVFLFSLELFPSGHCT 707
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,664,513
Number of Sequences: 27780
Number of extensions: 152974
Number of successful extensions: 426
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 408
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 426
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 408121444
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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