Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_pT_D11
         (399 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyce...    26   2.5  
SPAC1782.12c |||DUF423 protein|Schizosaccharomyces pombe|chr 1||...    25   3.3  
SPBC530.15c ||SPBC661.01|spermidine family transporter |Schizosa...    24   10.0 
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    24   10.0 
SPCC1682.01 |qcr9||ubiquinol-cytochrome-c reductase complex subu...    24   10.0 

>SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1610

 Score = 25.8 bits (54), Expect = 2.5
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = +1

Query: 28   QIFFPSLLHSNAWQMQXKCI 87
            Q FFPSL +SN  QM+  C+
Sbjct: 1243 QEFFPSLCNSNDLQMESVCM 1262


>SPAC1782.12c |||DUF423 protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 118

 Score = 25.4 bits (53), Expect = 3.3
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = -2

Query: 368 RKLRQVTPLGGTCLILGWIAMV 303
           R L  +TP+GG  ++ GW  M+
Sbjct: 96  RILGPLTPIGGLVMLTGWATML 117


>SPBC530.15c ||SPBC661.01|spermidine family transporter
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 516

 Score = 23.8 bits (49), Expect = 10.0
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = -2

Query: 368 RKLRQVTPLGGTCLILGWIAMVF 300
           +KLR V  +G  CL  G+ + +F
Sbjct: 72  KKLRNVAVMGSACLCAGFGSSIF 94


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1461

 Score = 23.8 bits (49), Expect = 10.0
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = +3

Query: 183  ISYYIFYMNLSTITNFYFKRINSF 254
            + Y   Y ++  + N +FK +NSF
Sbjct: 1204 VKYLCEYDSIDKVRNSFFKNLNSF 1227


>SPCC1682.01 |qcr9||ubiquinol-cytochrome-c reductase complex subunit
           10|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 85

 Score = 23.8 bits (49), Expect = 10.0
 Identities = 12/24 (50%), Positives = 17/24 (70%)
 Frame = +3

Query: 204 MNLSTITNFYFKRINSF*FKTIFL 275
           M  STI N +F+R +SF + TIF+
Sbjct: 19  MASSTIYNIFFRRNSSF-YATIFV 41


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,477,260
Number of Sequences: 5004
Number of extensions: 24640
Number of successful extensions: 40
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 40
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 134126124
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)