Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_pT_D11
         (399 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL117202-22|CAB57900.1|  691|Caenorhabditis elegans Hypothetical...    29   0.93 
AL032631-16|CAB63338.2|  156|Caenorhabditis elegans Hypothetical...    28   2.8  
Z92796-6|CAB63232.1|  405|Caenorhabditis elegans Hypothetical pr...    26   8.7  

>AL117202-22|CAB57900.1|  691|Caenorhabditis elegans Hypothetical
           protein Y47D3A.28 protein.
          Length = 691

 Score = 29.5 bits (63), Expect = 0.93
 Identities = 13/26 (50%), Positives = 18/26 (69%)
 Frame = -1

Query: 99  LRPADAFXLHLPCIGMQKRRKEDLKS 22
           +RPAD+F L  P  G++K  KE+ KS
Sbjct: 356 MRPADSFTLTTPTSGLKKITKEEEKS 381


>AL032631-16|CAB63338.2|  156|Caenorhabditis elegans Hypothetical
           protein Y106G6H.8 protein.
          Length = 156

 Score = 27.9 bits (59), Expect = 2.8
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = -2

Query: 377 TGDRKLRQVTPLGGTCLILGWIAMV 303
           +G    R+ TP+GG  LI+ W++ +
Sbjct: 131 SGVETTRKYTPIGGVTLIIAWLSFI 155


>Z92796-6|CAB63232.1|  405|Caenorhabditis elegans Hypothetical
           protein H25K10.7 protein.
          Length = 405

 Score = 26.2 bits (55), Expect = 8.7
 Identities = 13/73 (17%), Positives = 34/73 (46%)
 Frame = +3

Query: 15  TEYSSNLLSFSSAFQCMANAAQMHLQVLILTTL*FKQ*KYNQSXXXXXXXXXXSQYISYY 194
           +++ + + +FSS +QC+ + + + + ++ L  +  K  + N              Y  ++
Sbjct: 25  SDFLTKINNFSSKYQCVFSCSGLLINLVHLIIITRKSLRVNSVYVIMIGITLSDLYTMFH 84

Query: 195 IFYMNLSTITNFY 233
           + Y+ L  I + Y
Sbjct: 85  VVYVFLDNIVSNY 97


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,131,197
Number of Sequences: 27780
Number of extensions: 136245
Number of successful extensions: 205
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 204
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 205
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 619699724
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)