Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_pT_D07
         (753 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP8B7.04 |mug45||sequence orphan|Schizosaccharomyces pombe|chr...    29   0.54 
SPMIT.06 |||mitochondrial DNA binding endonuclease|Schizosacchar...    26   5.0  
SPAC18G6.10 |||chromosome segregation protein |Schizosaccharomyc...    26   5.0  
SPCC16A11.12c |ubp1||ubiquitin C-terminal hydrolase Ubp1|Schizos...    25   8.8  

>SPBP8B7.04 |mug45||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 819

 Score = 29.5 bits (63), Expect = 0.54
 Identities = 11/38 (28%), Positives = 22/38 (57%)
 Frame = +1

Query: 373 ILDKFMKHFLFRKLKWNFRYCFKQYCEFYQVFFKISSL 486
           + +  +K  + + +K + R+CFKQ  E+Y ++ K   L
Sbjct: 527 VYETALKLPVIKYVKGDNRFCFKQLLEYYDIYLKFKLL 564


>SPMIT.06 |||mitochondrial DNA binding
           endonuclease|Schizosaccharomyces pombe|chr
           mitochondrial|||Manual
          Length = 807

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 9/27 (33%), Positives = 18/27 (66%)
 Frame = -2

Query: 401 KKCFINLSNIPNKLKKVVNSFCVYVKY 321
           +K  I + N+PNK+  + ++  +YV+Y
Sbjct: 485 RKIAIEMRNVPNKIHGIQSNKLMYVRY 511


>SPAC18G6.10 |||chromosome segregation protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 688

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 16/37 (43%), Positives = 22/37 (59%)
 Frame = +1

Query: 37  HKSIAFKVNQPFSFFFTNSMCTWPAFLYLMXLLISSN 147
           HKS   +V  P SF  ++++ T PAF   + LL SSN
Sbjct: 164 HKS--HRVAVPMSFMDSSALHTSPAFSERLKLLSSSN 198


>SPCC16A11.12c |ubp1||ubiquitin C-terminal hydrolase
           Ubp1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 849

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 7/17 (41%), Positives = 14/17 (82%)
 Frame = -3

Query: 385 IYPIYQINLKKLLTVFV 335
           +YP++ +NLK+ L+ F+
Sbjct: 760 VYPVFDLNLKQFLSPFI 776


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,675,895
Number of Sequences: 5004
Number of extensions: 50871
Number of successful extensions: 109
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 109
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 359287726
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)