Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_pT_D04
         (671 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting pro...    33   0.028
SPAC7D4.09c |||steroid dehydrogenase |Schizosaccharomyces pombe|...    27   1.9  
SPAC14C4.05c |mug61||Sad1 interacting factor|Schizosaccharomyces...    26   4.3  
SPAC926.09c |fas1||fatty acid synthase beta subunit Fas1|Schizos...    25   9.9  
SPAC25B8.03 |||phosphatidylserine decarboxylase|Schizosaccharomy...    25   9.9  
SPAC3A12.14 |cam1||calmodulin Cam1 |Schizosaccharomyces pombe|ch...    25   9.9  

>SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting
           protein 3 homolog Bud6|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1385

 Score = 33.5 bits (73), Expect = 0.028
 Identities = 19/64 (29%), Positives = 32/64 (50%)
 Frame = -3

Query: 522 LTYILNMFIHLNASLRYKQTIKHVVYKQEQTNFQFKTNEINKNIISRIHSSKTKRFII*S 343
           L  +  + +HL  SL+YKQ++      Q ++N    T E N N ++R +S  + +  I S
Sbjct: 152 LPNVRELVMHLLQSLKYKQSLVKSRLNQSRSNLPQMTREANDNDVNRRNSRGSSQGSISS 211

Query: 342 ISEP 331
              P
Sbjct: 212 FRNP 215


>SPAC7D4.09c |||steroid dehydrogenase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 274

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = +2

Query: 95  LQKHWRAYLLIGXLACNMMVSKWSSKC 175
           + +HW  +L++G + CNM+    S  C
Sbjct: 228 IAQHWLIWLVLGWVLCNMVAISSSYAC 254


>SPAC14C4.05c |mug61||Sad1 interacting factor|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 844

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = +2

Query: 41  LQHFVTFPISLRSHVSHPLQKHWRAYLLIGXLA 139
           L+   +  +SL  +++  +   WR YLLIG LA
Sbjct: 687 LRSVYSHTVSLMKYLTSAVISCWRIYLLIGILA 719


>SPAC926.09c |fas1||fatty acid synthase beta subunit
            Fas1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2073

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 12/54 (22%), Positives = 26/54 (48%)
 Frame = -3

Query: 465  TIKHVVYKQEQTNFQFKTNEINKNIISRIHSSKTKRFII*SISEPTNIVTTTIN 304
            T+++ V++ E     +     N + +S   +    RFI+  I + TN++   +N
Sbjct: 1857 TMQNAVHRDELGRSDYGMVAANPSRVSASFTDAALRFIVDHIGQQTNLLLEIVN 1910


>SPAC25B8.03 |||phosphatidylserine decarboxylase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 516

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = +1

Query: 4   DLHRILHPSSNIPSTFRHFSNQLAFACVTPITKTLARLFV 123
           D HR   P+  +  + RHFS +L F+    + + L  LFV
Sbjct: 368 DYHRFHSPADWVIESRRHFSGEL-FSVSPFLARRLHNLFV 406


>SPAC3A12.14 |cam1||calmodulin Cam1 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 150

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -1

Query: 635 QIQRFTEAFRVRDTEQNGTVT 573
           QI  F EAF + D +Q+G +T
Sbjct: 10  QIAEFREAFSLFDRDQDGNIT 30


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,347,738
Number of Sequences: 5004
Number of extensions: 40740
Number of successful extensions: 124
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 124
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 307866294
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)