Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_pT_D04
         (671 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0239 - 1793612-1793716,1793808-1793826,1794424-1794599,179...    36   0.022
11_01_0242 - 1862106-1862210,1862302-1862320,1863082-1863257,186...    36   0.022
08_02_1569 - 27924930-27925034,27925149-27925167,27925271-279254...    33   0.27 
05_06_0223 - 26525618-26526112,26526203-26526370,26526649-265274...    29   2.6  
04_03_0591 + 17651848-17651878,17651919-17652121                       28   5.9  
11_04_0071 - 13165019-13165082,13165345-13165428,13166325-131665...    28   7.8  

>12_01_0239 -
           1793612-1793716,1793808-1793826,1794424-1794599,
           1794701-1794747,1795760-1796291
          Length = 292

 Score = 36.3 bits (80), Expect = 0.022
 Identities = 15/43 (34%), Positives = 24/43 (55%)
 Frame = -1

Query: 668 ISVDQFIVMCVQIQRFTEAFRVRDTEQNGTVTIAFEDFLTIAL 540
           I  D FI  C+ ++  TE F+ +DT  +G+ T  +E F+   L
Sbjct: 245 IEYDNFIECCLTVKGLTEKFKEKDTAFSGSATFTYEAFMLTVL 287


>11_01_0242 -
           1862106-1862210,1862302-1862320,1863082-1863257,
           1863359-1863405,1864443-1865022
          Length = 308

 Score = 36.3 bits (80), Expect = 0.022
 Identities = 15/43 (34%), Positives = 24/43 (55%)
 Frame = -1

Query: 668 ISVDQFIVMCVQIQRFTEAFRVRDTEQNGTVTIAFEDFLTIAL 540
           I  D FI  C+ ++  TE F+ +DT  +G+ T  +E F+   L
Sbjct: 261 IEYDNFIECCLTVKGLTEKFKEKDTAFSGSATFTYEAFMLTVL 303


>08_02_1569 -
           27924930-27925034,27925149-27925167,27925271-27925490,
           27925925-27925971,27926502-27927025
          Length = 304

 Score = 32.7 bits (71), Expect = 0.27
 Identities = 11/43 (25%), Positives = 27/43 (62%)
 Frame = -1

Query: 668 ISVDQFIVMCVQIQRFTEAFRVRDTEQNGTVTIAFEDFLTIAL 540
           +  D F+   + ++  TE F+ +DT  +G+ T++++ FL++ +
Sbjct: 257 LDFDNFVECGMIVKGLTEKFKEKDTRYSGSATLSYDGFLSMVI 299


>05_06_0223 -
           26525618-26526112,26526203-26526370,26526649-26527473,
           26527898-26528004,26529701-26529767
          Length = 553

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = -3

Query: 549 YCPELFYLKLTYILNMFIHLNASLRYKQTIK 457
           YC EL YLK+  +L    +LN  L + Q I+
Sbjct: 239 YCRELVYLKIPCLLEQLSYLNVDLCHLQMIE 269


>04_03_0591 + 17651848-17651878,17651919-17652121
          Length = 77

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = +3

Query: 57  LFQSACVRMCHTHYKNIGALI 119
           L QS C+R+ H H KN+GA +
Sbjct: 54  LQQSPCMRVRHPHVKNMGAYV 74


>11_04_0071 -
           13165019-13165082,13165345-13165428,13166325-13166524,
           13166756-13170655
          Length = 1415

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 17/44 (38%), Positives = 22/44 (50%)
 Frame = -3

Query: 642 VRSDTTFH*SISSTRYRTKWDGYHSL*RLPYYCPELFYLKLTYI 511
           +   T  H SI+ TRY  KWD Y       +Y  + F  KLTY+
Sbjct: 546 IAQSTIQHLSIN-TRYAYKWDVYSQ----KFYSKDDFQRKLTYV 584


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,493,803
Number of Sequences: 37544
Number of extensions: 209230
Number of successful extensions: 493
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 486
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 493
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1703141568
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)