Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_pT_D04
         (671 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006676-5|AAK71383.2|  172|Caenorhabditis elegans Hypothetical ...    48   5e-06
U41556-10|AAM51520.1|  415|Caenorhabditis elegans Hypothetical p...    30   1.3  
Z98866-11|CAB11564.2|  335|Caenorhabditis elegans Hypothetical p...    27   9.2  
U62896-1|AAB17868.1|  335|Caenorhabditis elegans PIE-1 protein.        27   9.2  
AF039712-3|AAK21400.3|  393|Caenorhabditis elegans Hypothetical ...    27   9.2  

>AC006676-5|AAK71383.2|  172|Caenorhabditis elegans Hypothetical
           protein M04F3.4 protein.
          Length = 172

 Score = 48.4 bits (110), Expect = 5e-06
 Identities = 20/44 (45%), Positives = 30/44 (68%)
 Frame = -1

Query: 668 ISVDQFIVMCVQIQRFTEAFRVRDTEQNGTVTIAFEDFLTIALS 537
           I+ D FI +CV +Q  T AFR  DT+++G +T+ +E FLT+  S
Sbjct: 126 INFDDFIQLCVVLQTLTAAFRDVDTDRDGVITVGYEQFLTMVFS 169


>U41556-10|AAM51520.1|  415|Caenorhabditis elegans Hypothetical
           protein C25B8.7 protein.
          Length = 415

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 21/64 (32%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
 Frame = -3

Query: 537 LFYLKLTYILNMFIHLNASLRYKQTIKHVVYKQEQTNFQFKTN-EINKNIISRIHSSKTK 361
           L+ L L  I+N  I   A   Y+Q I   V K  + N+Q + + E NK+ I+  +S  +K
Sbjct: 311 LYLLILNPIINPLITAFAYAPYRQMIYSRVRKSSRKNYQDQNSYETNKSNITSTNSVSSK 370

Query: 360 RFII 349
            F +
Sbjct: 371 VFYV 374


>Z98866-11|CAB11564.2|  335|Caenorhabditis elegans Hypothetical
           protein Y49E10.14 protein.
          Length = 335

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = +2

Query: 11  IEYYIHHPTFLQHFVTFPI 67
           I YY HHP   Q F+ FP+
Sbjct: 233 IAYYHHHPQHQQQFLPFPM 251


>U62896-1|AAB17868.1|  335|Caenorhabditis elegans PIE-1 protein.
          Length = 335

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = +2

Query: 11  IEYYIHHPTFLQHFVTFPI 67
           I YY HHP   Q F+ FP+
Sbjct: 233 IAYYHHHPQHQQQFLPFPM 251


>AF039712-3|AAK21400.3|  393|Caenorhabditis elegans Hypothetical
           protein F54D7.2 protein.
          Length = 393

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = -1

Query: 182 TLGIYLTTYLPSYYRPARLSTNKRANVFVMGVTH 81
           TLGIYL+T   S+Y P+      R +  V+   H
Sbjct: 330 TLGIYLSTIALSFYNPSNELPILRVSTLVITALH 363


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,746,822
Number of Sequences: 27780
Number of extensions: 221341
Number of successful extensions: 676
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 666
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 676
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1518563232
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)