Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_pT_C23
         (680 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0022 - 170045-170095,170406-170554,170764-170875,171398-17...    34   0.12 
05_01_0020 + 143273-143592,144278-144371,144466-144537,144675-14...    33   0.21 
11_05_0010 - 18356835-18357080,18357475-18357672,18357780-183580...    29   3.4  
04_04_0326 - 24407201-24407374,24407397-24407460,24408266-244086...    28   6.0  

>01_01_0022 -
           170045-170095,170406-170554,170764-170875,171398-171469,
           171578-171671,171770-171921,172004-172072
          Length = 232

 Score = 33.9 bits (74), Expect = 0.12
 Identities = 12/24 (50%), Positives = 19/24 (79%)
 Frame = -3

Query: 678 DELADMMXQADEVQEALGRQYGMP 607
           DE+ D+M  ++E+QE+LGR Y +P
Sbjct: 133 DEMTDLMDVSNEIQESLGRSYNIP 156


>05_01_0020 +
           143273-143592,144278-144371,144466-144537,144675-144786,
           145179-145327,145484-145510,145931-145981
          Length = 274

 Score = 33.1 bits (72), Expect = 0.21
 Identities = 12/24 (50%), Positives = 18/24 (75%)
 Frame = -3

Query: 678 DELADMMXQADEVQEALGRQYGMP 607
           DE+ D+M  ++E+QE LGR Y +P
Sbjct: 166 DEMMDLMDVSNEIQETLGRSYNVP 189


>11_05_0010 -
           18356835-18357080,18357475-18357672,18357780-18358046,
           18358870-18359067,18359151-18359417,18359524-18359724,
           18359807-18361363,18361499-18361859,18362602-18363467
          Length = 1386

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 23/70 (32%), Positives = 36/70 (51%), Gaps = 1/70 (1%)
 Frame = +1

Query: 325 LNDINNMFHNKMPISTWVQTLSYLSV-CLWGTRNLGQTKFVHGNTIFVPDAVGSRFPIWS 501
           L+D+ N+   ++ ISTW QT     + CL   + L   + VH   IF PD +   F +  
Sbjct: 653 LSDLPNLRVLEILISTWEQTKEEQFLDCLGSMKKL---QIVH---IFAPD-ISLDFMLNK 705

Query: 502 CWSLHNIVKV 531
            W+LH + K+
Sbjct: 706 DWTLHELQKL 715


>04_04_0326 -
           24407201-24407374,24407397-24407460,24408266-24408689,
           24408885-24409057,24409178-24409275,24409723-24409853,
           24410053-24410174,24411091-24411245,24411976-24412081,
           24412328-24412419,24412499-24412620,24413444-24413544,
           24413636-24413849,24414173-24414311,24415228-24415584
          Length = 823

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +1

Query: 439 FVHGNTIFVPDAVGSRFPIWSCWSL 513
           F+ G  + +     S FP+W CWSL
Sbjct: 687 FLPGLVVHIERQRRSLFPLWKCWSL 711


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,084,194
Number of Sequences: 37544
Number of extensions: 260810
Number of successful extensions: 618
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 604
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 618
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1721314888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)