Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_pT_C23
         (680 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY071206-1|AAL48828.1|  226|Drosophila melanogaster RE24819p pro...    93   3e-19
AE014296-2937|AAF49322.2|  226|Drosophila melanogaster CG6259-PA...    93   3e-19
DQ239724-1|ABB76244.1|  217|Drosophila melanogaster kl-2 protein...    29   4.5  
AF313479-1|AAG29545.1| 4167|Drosophila melanogaster 1-beta dynei...    29   4.5  

>AY071206-1|AAL48828.1|  226|Drosophila melanogaster RE24819p
           protein.
          Length = 226

 Score = 93.1 bits (221), Expect = 3e-19
 Identities = 48/93 (51%), Positives = 56/93 (60%), Gaps = 1/93 (1%)
 Frame = -3

Query: 678 DELADMMXQADEVQEALGRQYGMPXXXXXXXXXXXXXXXXXXXXXXXASYLDDVVKAPAA 499
           D++ADM  QADEVQEALGR YGMP                        SYLDDVVKAP A
Sbjct: 133 DDMADMFEQADEVQEALGRTYGMPEVDDDDLQAELDALGDEIALDDDTSYLDDVVKAPEA 192

Query: 498 PDREPGADSI-RNKDGVPVDEFGLPQVPSTPQT 403
           P REPGADSI   K  +  DEFGLP++P++ +T
Sbjct: 193 PSREPGADSIVPGKSTIETDEFGLPKIPTSLKT 225


>AE014296-2937|AAF49322.2|  226|Drosophila melanogaster CG6259-PA
           protein.
          Length = 226

 Score = 93.1 bits (221), Expect = 3e-19
 Identities = 48/93 (51%), Positives = 56/93 (60%), Gaps = 1/93 (1%)
 Frame = -3

Query: 678 DELADMMXQADEVQEALGRQYGMPXXXXXXXXXXXXXXXXXXXXXXXASYLDDVVKAPAA 499
           D++ADM  QADEVQEALGR YGMP                        SYLDDVVKAP A
Sbjct: 133 DDMADMFEQADEVQEALGRTYGMPEVDDDDLQAELDALGDEIALDDDTSYLDDVVKAPEA 192

Query: 498 PDREPGADSI-RNKDGVPVDEFGLPQVPSTPQT 403
           P REPGADSI   K  +  DEFGLP++P++ +T
Sbjct: 193 PSREPGADSIVPGKSTIETDEFGLPKIPTSLKT 225


>DQ239724-1|ABB76244.1|  217|Drosophila melanogaster kl-2 protein
           protein.
          Length = 217

 Score = 29.5 bits (63), Expect = 4.5
 Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
 Frame = +3

Query: 570 HQVLQQAHHHQSLA-YHIACRGLLELHQLVPSYQLT 674
           H+ +Q  + + S A Y   CRGL E H+L+ S  +T
Sbjct: 51  HERIQNINEYHSYAVYRNTCRGLFERHKLLFSIHMT 86


>AF313479-1|AAG29545.1| 4167|Drosophila melanogaster 1-beta dynein
            protein.
          Length = 4167

 Score = 29.5 bits (63), Expect = 4.5
 Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
 Frame = +3

Query: 570  HQVLQQAHHHQSLA-YHIACRGLLELHQLVPSYQLT 674
            H+ +Q  + + S A Y   CRGL E H+L+ S  +T
Sbjct: 3400 HERIQNINEYHSYAVYRNTCRGLFERHKLLFSIHMT 3435


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,476,327
Number of Sequences: 53049
Number of extensions: 475803
Number of successful extensions: 1686
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1492
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1661
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2971922400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)