Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_pT_C23
         (680 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016448-6|AAB65951.1|  217|Caenorhabditis elegans Hypothetical ...    51   9e-07
AF024491-2|AAT92081.1|  765|Caenorhabditis elegans Hypothetical ...    28   7.1  
AF024491-1|AAB70312.2|  850|Caenorhabditis elegans Hypothetical ...    28   7.1  

>AF016448-6|AAB65951.1|  217|Caenorhabditis elegans Hypothetical
           protein F41E6.9 protein.
          Length = 217

 Score = 50.8 bits (116), Expect = 9e-07
 Identities = 28/89 (31%), Positives = 43/89 (48%), Gaps = 1/89 (1%)
 Frame = -3

Query: 678 DELADMMXQADEVQEALGRQYGMP-XXXXXXXXXXXXXXXXXXXXXXXASYLDDVVKAPA 502
           D++ DM+   +E+QEA+ RQY  P                         +YLD+ + AP 
Sbjct: 132 DQMEDMLDMNNEIQEAMSRQYDTPDIDEADLEAELAMLGDELDIGESDTNYLDEALAAPT 191

Query: 501 APDREPGADSIRNKDGVPVDEFGLPQVPS 415
            P  +P     R  +G+ VDEFGLP++P+
Sbjct: 192 VPSDKP---KTRVAEGLEVDEFGLPKLPA 217


>AF024491-2|AAT92081.1|  765|Caenorhabditis elegans Hypothetical
           protein C24A1.3b protein.
          Length = 765

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 12/52 (23%), Positives = 30/52 (57%)
 Frame = +3

Query: 288 WIFIEILSFERFIK*YKQYVS**NANLNMGPNPFIFISVFVGYSEPGADQIR 443
           W+ ++I +FE+ ++ +KQ++   NA L       +F  +  G+S+   ++++
Sbjct: 43  WVDVQIAAFEKSLEDFKQHMCPENAELKSTQLLSLFHIICAGHSDSQPEKLQ 94


>AF024491-1|AAB70312.2|  850|Caenorhabditis elegans Hypothetical
           protein C24A1.3a protein.
          Length = 850

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 12/52 (23%), Positives = 30/52 (57%)
 Frame = +3

Query: 288 WIFIEILSFERFIK*YKQYVS**NANLNMGPNPFIFISVFVGYSEPGADQIR 443
           W+ ++I +FE+ ++ +KQ++   NA L       +F  +  G+S+   ++++
Sbjct: 43  WVDVQIAAFEKSLEDFKQHMCPENAELKSTQLLSLFHIICAGHSDSQPEKLQ 94


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,911,985
Number of Sequences: 27780
Number of extensions: 261421
Number of successful extensions: 766
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 721
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 758
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1550199966
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)