Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_pT_C23
         (680 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex det...    24   1.5  
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    22   4.7  
DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex det...    22   4.7  
AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength rhodo...    22   4.7  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   6.2  

>AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex
           determiner protein.
          Length = 413

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 14/35 (40%), Positives = 17/35 (48%)
 Frame = +3

Query: 108 STSKIYAYNFQASTKYKYLYIHKNMQMKQKIINFE 212
           S S  Y YN   + KY Y   +K +  K  IIN E
Sbjct: 317 SLSNNYNYN-NNNYKYNYNNYNKKLYYKNYIINIE 350


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -2

Query: 286 VIYNIIKTKSLNFYPNKFLVN 224
           V+Y  + TKSL    N F++N
Sbjct: 73  VVYIFLSTKSLRTPSNLFVIN 93


>DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 10/30 (33%), Positives = 13/30 (43%)
 Frame = +3

Query: 123 YAYNFQASTKYKYLYIHKNMQMKQKIINFE 212
           Y YN+     Y     +K +  K  IIN E
Sbjct: 96  YKYNYNNKYNYNNNNYNKKLYYKNYIINIE 125


>AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 152

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -2

Query: 286 VIYNIIKTKSLNFYPNKFLVN 224
           V+Y  + TKSL    N F++N
Sbjct: 39  VVYIFLSTKSLRTPSNLFVIN 59


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 12/35 (34%), Positives = 17/35 (48%), Gaps = 2/35 (5%)
 Frame = -3

Query: 507  PAAPDREPGADSIRNKDGVPVDEF--GLPQVPSTP 409
            P  P   PG   I   +G+ +  F  G+P +P TP
Sbjct: 1128 PQKPFTSPGG--IPGPNGIKMPSFMEGMPHLPFTP 1160


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 157,524
Number of Sequences: 438
Number of extensions: 3005
Number of successful extensions: 14
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20708550
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)