Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_pT_C21
         (788 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0808 - 28196563-28196735,28197369-28197440,28197540-281976...    31   1.0  
01_05_0801 + 25353708-25353914,25354307-25354429,25355035-253552...    29   5.6  
11_04_0366 - 16832018-16832371,16832746-16834752,16835109-16835480     28   9.7  

>04_04_0808 -
           28196563-28196735,28197369-28197440,28197540-28197666,
           28198362-28198430,28198517-28198583,28198751-28198872,
           28199302-28199412,28199596-28199661,28200156-28200213,
           28200307-28200343,28200420-28200513,28200967-28201032,
           28201139-28201203,28201352-28201496,28201925-28202074,
           28202266-28202335,28202752-28202828,28202919-28202987,
           28203798-28203881,28204018-28204061,28204172-28204273,
           28204420-28204618,28204672-28204727,28204886-28204958,
           28205685-28205771,28205863-28205976,28206985-28207092,
           28207183-28207278,28207722-28207787,28208130-28208222,
           28208429-28208512,28208961-28209078,28209191-28209267,
           28209459-28209641,28210542-28210636,28210903-28211053,
           28212218-28212325,28212513-28212612,28212788-28212840,
           28214022-28214102
          Length = 1269

 Score = 31.1 bits (67), Expect = 1.0
 Identities = 15/49 (30%), Positives = 22/49 (44%)
 Frame = +2

Query: 332 ARAGTTLF*LIYLVPPTK*SSIQNIEKLTKAHGRCHLNGCNRQ*IDNKI 478
           A     L  L++LVPPT+        ++  A G C + G   Q  D K+
Sbjct: 19  AAVAVALMQLVFLVPPTRAQQSNGTSRVVPAEGYCSMYGICAQRSDGKV 67


>01_05_0801 +
           25353708-25353914,25354307-25354429,25355035-25355205,
           25355303-25355392,25355497-25355583,25355664-25355719,
           25355812-25355905,25356032-25356144,25356211-25356283,
           25356603-25356683,25356865-25356951,25357031-25357135,
           25357279-25357385,25357481-25357541,25357931-25358158,
           25359720-25360677,25360816-25360997,25361237-25361326,
           25361422-25361709,25361844-25362056,25362560-25362784
          Length = 1212

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 9/20 (45%), Positives = 15/20 (75%)
 Frame = -1

Query: 233 ITKTPPRLDHFDPDTEFYTS 174
           +T+ PP+ + +DP T F+TS
Sbjct: 362 LTEQPPKFEFYDPKTPFFTS 381


>11_04_0366 - 16832018-16832371,16832746-16834752,16835109-16835480
          Length = 910

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = +3

Query: 684 IVLVTCLCKTDLLILNCLAISTKDLFP 764
           I LV  LC++ L +LNC +++T   FP
Sbjct: 784 IRLVLRLCRSSLKLLNCPSLATVSQFP 810


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,861,658
Number of Sequences: 37544
Number of extensions: 318938
Number of successful extensions: 486
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 480
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 486
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2127163404
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)