Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_pT_C20
         (826 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      37   2e-04
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          35   8e-04
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    25   1.1  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    24   1.5  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    22   7.9  

>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 37.1 bits (82), Expect = 2e-04
 Identities = 17/26 (65%), Positives = 20/26 (76%)
 Frame = -3

Query: 731 GEVNVKQEELASFISTAEQLQVKGLT 654
           GEVNV Q  L+SF+ TAE L+V GLT
Sbjct: 91  GEVNVHQRSLSSFLKTAEVLRVSGLT 116



 Score = 31.1 bits (67), Expect = 0.013
 Identities = 11/25 (44%), Positives = 19/25 (76%)
 Frame = -2

Query: 810 PTQHPIVFLKDVSHSALRDLLQFMY 736
           P +HP++ L+DV+ S L  L++F+Y
Sbjct: 65  PCKHPVIVLQDVAFSDLHALVEFIY 89


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 35.1 bits (77), Expect = 8e-04
 Identities = 14/26 (53%), Positives = 21/26 (80%)
 Frame = -3

Query: 734 QGEVNVKQEELASFISTAEQLQVKGL 657
           +GE++V Q EL S + TA+QL++KGL
Sbjct: 95  RGEIDVSQAELQSLLKTADQLKIKGL 120


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 24.6 bits (51), Expect = 1.1
 Identities = 12/41 (29%), Positives = 22/41 (53%)
 Frame = +3

Query: 198 NINISSCRAIKTSHFHIRIVLSVISFVIVRAIFIVIPHTLI 320
           N  +S  R  +++  H   ++  +SF IV   +I+I  TL+
Sbjct: 388 NSEVSKSRTKESAWRHFAAIIEWLSFFIVIFTYIIILITLV 428


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 24.2 bits (50), Expect = 1.5
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = +1

Query: 634 LSSF*LPVKPLT*SCSAVLINDANSSCLTLTSP*IHKL 747
           LSS      P+T + S ++ N  NS+C    SP   KL
Sbjct: 323 LSSSTTTTSPMTSTKSTIVRNHLNSTCSVTNSPHQKKL 360


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 21.8 bits (44), Expect = 7.9
 Identities = 8/11 (72%), Positives = 9/11 (81%), Gaps = 1/11 (9%)
 Frame = +1

Query: 571 CLCCDDL-GPG 600
           C CCD+L GPG
Sbjct: 13  CWCCDNLGGPG 23


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 183,855
Number of Sequences: 438
Number of extensions: 3347
Number of successful extensions: 10
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26338809
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)