Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_pT_C19
         (364 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q9AIH0 Cluster: DNA-directed RNA polymerase; n=17; Cand...    31   4.8  
UniRef50_Q5CTR9 Cluster: TBC domain containing protein; n=2; Cry...    31   6.3  
UniRef50_Q6NKL6 Cluster: DNA polymerase III, beta chain; n=11; C...    31   8.3  

>UniRef50_Q9AIH0 Cluster: DNA-directed RNA polymerase; n=17;
           Candidatus Carsonella ruddii|Rep: DNA-directed RNA
           polymerase - Carsonella ruddii
          Length = 1292

 Score = 31.5 bits (68), Expect = 4.8
 Identities = 13/29 (44%), Positives = 20/29 (68%)
 Frame = +1

Query: 277 KTLQIFVYEMQLFIYCIILNVIITQCNSF 363
           K L+  + + +LFI C+IL + I +CNSF
Sbjct: 157 KALKKLLSDRELFIDCLILKIKIKKCNSF 185


>UniRef50_Q5CTR9 Cluster: TBC domain containing protein; n=2;
           Cryptosporidium|Rep: TBC domain containing protein -
           Cryptosporidium parvum Iowa II
          Length = 1246

 Score = 31.1 bits (67), Expect = 6.3
 Identities = 18/34 (52%), Positives = 20/34 (58%)
 Frame = +1

Query: 7   YLCNISQNAIIFLSNQSFSGSSFLNQNKSCTLFV 108
           YL NISQ       N SF GS +LNQN S  +FV
Sbjct: 639 YLKNISQTFQPDSFNFSFFGSHWLNQNNSMHIFV 672


>UniRef50_Q6NKL6 Cluster: DNA polymerase III, beta chain; n=11;
           Corynebacterineae|Rep: DNA polymerase III, beta chain -
           Corynebacterium diphtheriae
          Length = 405

 Score = 30.7 bits (66), Expect = 8.3
 Identities = 15/44 (34%), Positives = 24/44 (54%)
 Frame = +1

Query: 193 HISAGTRVNGIIIVSLRTSETKVGNLLEKTLQIFVYEMQLFIYC 324
           HI+A  R  G I V+ +     +G L  KT+++FV   Q+ + C
Sbjct: 71  HINADVRQPGRIAVAGKLMSDIIGTLPNKTIEVFVEGTQVQVVC 114


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 300,849,663
Number of Sequences: 1657284
Number of extensions: 4758174
Number of successful extensions: 11343
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 11109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11341
length of database: 575,637,011
effective HSP length: 90
effective length of database: 426,481,451
effective search space used: 12794443530
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)